Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01912 ATGGACGGCGCCGCCGCCGATTCTTCTGATTCTTCCCTTCATCATGATTTGCCTTTCACGCCGCCGGAAGCGGCGGAGGATCATTACTATTCCGATTCAGGACTGTTTCGTGTTTCCTTGACGGAGGCTCCGATTCTCCTGCTTATTAAATTTCACCGAGCACTGCGATTGGAGGTTGCGGATTTGCGGCGCGTGACGTTGGCGGCGGCCGAGAGTGGGGGTTACGGCGGCGAGTTTGTGTCGGGATTGATTCGGAGAGTTGAGTTTCTGAAACTTGCTTATAAGTATCATTGCGCTGCCGAGGATGAGGTTGTATTCCCAGCTCTTGATCTACATACAAAAAATGTCATCTCCACATATTCTTTGGAGCATGAGAGCTTGGATGGCCTCTTCACTTCCATTTCTAAACACTGTGAAGACATCAATGGAGAAAACAAAGATATCTCCAAGCCATTTCAAGAACTGATTTTCTGTTTAGGCACCATTCAAACCACCATTTGCCAGCATATGATCAAAGAAGAACAACAGGTTTTTCCATTGCTGATGAAGGAATTCTCTGCAAGAGAACAGGCGTCGCTTGTGTGGCAATTCATCTGTAGTGTACCAATGATACTATTGGAGGAGCTTTTGCCATGGATGATGTCTTTTCTTCCAGCAGATCAGCAATCAGAAGTTGTAAACTGTATAAGAGATGCAGTGCCGAACGAGAAACTTCTGCAAGAGGTGATAATGTCTTGGCTTGGCAGCACTGAGAAACCTTGGAGAGATGTAGAAGTAGAAGATATAAATTTACAATCATCTCAAGATCAAAATGGACAGAGCCCTGTTGATAGCCTTCATATTTGGCATGGTGCCATAATGAAGGATCTAAAGGAAGTATTGAAATGCCTATTTCAAGTCAAGAGTTGCACTTCAACAGCACTTTCTAACCTTGATACCTTACTTGTCCAAATAAAGTTCTTGGCTGATGTAATTTTATTTTACAGAAAGGCATCAGAGAAATTCTTTCGTCCTGTGTTCAATCAACGATCTGACATCTGCTTAACCACCTCTGACCAATCATTTCTTAGTGACGGTCATATTGAAGGCTTACAGCAGTTGCTACAGCATGGTGCTCAAGATACTATACCTTTGAGTATCTTTTTGGAAAAATTGTGCTGGGACATGGAGTCGTTTGTGATGCGAGTCAGCAAACAGTTCACTTTTCAAGAAACAAAGGTGCTTCCAGTGATTAGAAAGAGCTGCAGCCATAAAACACAGCAACAACTCCTGTATATGAGCCTCCGAACCTTACCGCTTGGACTCTTGAAGTGTATAATTACTTGGTTTTCAGCTCACTTATCTGAGGAAGAATTGAGATCTGTACTTCAGGCCAAATCAGAGGGAGATTTTCGGGTTAACAATGCACTTATCGCCCTCTTGCATGACTGGTTTCGAATTGGCTACTCAGGAAAAACCTCGGTAGAACAATTTGGACAAGATTTGCAAAAAATTTTCAAGACTAGAAGCTATGTTTTGCATAAACAGGTGGAACAAATGAAAGAAGTGGCTGGAATTTCATCGTTGAGCTCAAATGCTCAAATTTATAAGGGGGAAAACTCTGAGGAAATGGGATTACTTTCTACCAACAAGGATAAGAGCTTCATGTCAAATTCTTCAAATAATGTTTCTTGCGCTGCTTCTGTTTATGGAACATCTTATTCTAGTGGAATCAATCTGCAAATACATTTTCCAGGAACAGTGAAGGTACCATGTCCGTATACTAAACATCTTTATGAAGAACGCCCACATTCTGCTTTTAATCAGCCAAAACCAATAGACCTCATTTTCTTCTTCCACAAAGCTCTCAAGAAAGAATTGGATTACTTTGTTCTTGGTTCAGCTAAACTGGTTGAACATGTTGGAATCTTGACAGAGTTTAGACGGCGGTTCCAATTGGTGAAATTTTTATATCAGATCCATACGGATGCCGAAGACCAGATTGCTTTTCCAGCTTTGGAGAAGAAGGGAAAGTTCCAAAACATTAGCTACTCCTACACTATTGATCATAAACTGGAAGTACACCAATTCAGTAAAATATCCTTCATTCTTAGTGAAATGTCTGAATTGCACTCTTCAAATTTTTATGTGAATGCTGATAGGAAAATATTTAGTCACCGGCAGCTCTGTTTGGAACTGCATGATATGTGCAAATCTTTGCACAAGTCTCTTTCTGACCACGTTGATCGTGAAGAAATTGAGCTTTGGCCCTTGTTCAGAGAATTCTTCACGATTGATGAACAAGAAACACTAATTGGAGCAATATTTGGCAGAACAAATGCTGAAATATTGCAAGATATGATACCTTGGCAAATGTCATATTTAACACCTTCTGATCAACATGACATGATGTGTATGTTCCACAAGGTAACAAGAAATACCATGTTCAATGAATGGTTAAGAGAGTGGTGGGAAGGTTATGACCATGAGAATGTGGCAGCTGAGGTGAAAACTATTACTCCCTTACTGACTTCAGATCCTTTGGAAATCATCTCCAAATATTTATCCAAGGAAGTAACAGATGTATGTGAAGGAAATCTTTTTGGAAAAACCGTCAGCTCAACACAGAAGGAACATCAATTTCATGTTACCAATGCTGACAAGACAGAAGTGTTCAGTTTGAATGATGAAGCAAAAGATTTCGATGGCGACCAACAAAATGAAACGTTTGAAGAATCCACAAAACTTGTTTCTCATGGGATTGATAGGGATGCTGATGGTATCACAGAACATGAGACAGAAAAAGAACGACCTGATGAAGGTAAGAAATCAAGCCAAAATGATCACCTTCTTACAATTAGTCAAGAAGAACTAGAGGCTGTAATAAGAAGGGTATCAAGAGACTCATCCTTAGATTCCAAAAGTAAATCCCATTTGATACAGAATTTGCTAATGAGCCGTTGGATTGCAAAGCACCATTCCCAAGTAGAGATAAACAACATTACATCAGAAAACCAAGGATATGCAGGTCAGTATCCATCTTATAGGGATTCCTTGAAGAAAGAATTTGGCTGCAAACATTACAAAAGAAACTGCAAGCTTCTAGCTCCGTGTTGCAACCAACTATATACATGCATACATTGTCATGACGAGGCTACCGATCACTCATTGGATAGAAAAACCATCACAAAGATGATGTGTATGAACTGCTTGGTAGTTCAGCCCATTGGAAAGACATGTTTAACTCTCTCTTGTGGTGATTTATCCATGGGAAAATACTTCTGCAAGATCTGCAAACTATTTGATGATTCAAGAGATATCTATCACTGTCCATACTGCAACCTATGTCGAGTCGGGAAGGGATTGGGCATTGATTACTTCCATTGCATGAACTGCAATGCCTGTATGTCTCGTGCACTCTCAGTTCATATATGCAGAGAGAAATGCCTAGAAGACAACTGCCCTATTTGCCATGAATACATCTTCACTTCCACCCTTCCAGTCAAGTCCCTTCCATGTGGCCATTTGATGCATTCAGCATGTTTTCAGGAATACACCTACACTCATTATACCTGCCCTATCTGCAGCAAGTCGCTAGGAGACATGCAGGTTTACTTTGAGATGTTGGATGCATTGTTGGCTGAAGAGAAAATTCCAGAAGAGTATTCTGGAAAAACTCAGGTCATATTGTGTAATGACTGCGAGAAGCGTGGAACGGCACCGTTCCACTGGTTGTACCATAAATGTTCCTATTGTGGTTCATATAATACTAGGGTTTTGTAA 3762 40.56 MDGAAADSSDSSLHHDLPFTPPEAAEDHYYSDSGLFRVSLTEAPILLLIKFHRALRLEVADLRRVTLAAAESGGYGGEFVSGLIRRVEFLKLAYKYHCAAEDEVVFPALDLHTKNVISTYSLEHESLDGLFTSISKHCEDINGENKDISKPFQELIFCLGTIQTTICQHMIKEEQQVFPLLMKEFSAREQASLVWQFICSVPMILLEELLPWMMSFLPADQQSEVVNCIRDAVPNEKLLQEVIMSWLGSTEKPWRDVEVEDINLQSSQDQNGQSPVDSLHIWHGAIMKDLKEVLKCLFQVKSCTSTALSNLDTLLVQIKFLADVILFYRKASEKFFRPVFNQRSDICLTTSDQSFLSDGHIEGLQQLLQHGAQDTIPLSIFLEKLCWDMESFVMRVSKQFTFQETKVLPVIRKSCSHKTQQQLLYMSLRTLPLGLLKCIITWFSAHLSEEELRSVLQAKSEGDFRVNNALIALLHDWFRIGYSGKTSVEQFGQDLQKIFKTRSYVLHKQVEQMKEVAGISSLSSNAQIYKGENSEEMGLLSTNKDKSFMSNSSNNVSCAASVYGTSYSSGINLQIHFPGTVKVPCPYTKHLYEERPHSAFNQPKPIDLIFFFHKALKKELDYFVLGSAKLVEHVGILTEFRRRFQLVKFLYQIHTDAEDQIAFPALEKKGKFQNISYSYTIDHKLEVHQFSKISFILSEMSELHSSNFYVNADRKIFSHRQLCLELHDMCKSLHKSLSDHVDREEIELWPLFREFFTIDEQETLIGAIFGRTNAEILQDMIPWQMSYLTPSDQHDMMCMFHKVTRNTMFNEWLREWWEGYDHENVAAEVKTITPLLTSDPLEIISKYLSKEVTDVCEGNLFGKTVSSTQKEHQFHVTNADKTEVFSLNDEAKDFDGDQQNETFEESTKLVSHGIDRDADGITEHETEKERPDEGKKSSQNDHLLTISQEELEAVIRRVSRDSSLDSKSKSHLIQNLLMSRWIAKHHSQVEINNITSENQGYAGQYPSYRDSLKKEFGCKHYKRNCKLLAPCCNQLYTCIHCHDEATDHSLDRKTITKMMCMNCLVVQPIGKTCLTLSCGDLSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRALSVHICREKCLEDNCPICHEYIFTSTLPVKSLPCGHLMHSACFQEYTYTHYTCPICSKSLGDMQVYFEMLDALLAEEKIPEEYSGKTQVILCNDCEKRGTAPFHWLYHKCSYCGSYNTRVL 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25553183 25560141 - MELO3C017147.2.1 Cme02g01912 321801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01912 1253 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 36 1253 - -
Cme02g01912 1253 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 36 1253 - -
Cme02g01912 1253 SUPERFAMILY CHY zinc finger-like 1009 1074 IPR037274 GO:0008270
Cme02g01912 1253 MobiDBLite consensus disorder prediction 893 939 - -
Cme02g01912 1253 Gene3D nmb1532 protein domain like 47 199 - -
Cme02g01912 1253 Gene3D nmb1532 protein domain like 600 771 - -
Cme02g01912 1253 MobiDBLite consensus disorder prediction 893 942 - -
Cme02g01912 1253 Pfam Ring finger domain 1145 1188 IPR001841 -
Cme02g01912 1253 SMART ring_2 1147 1188 IPR001841 -
Cme02g01912 1253 Pfam CHY zinc finger 1018 1093 IPR008913 GO:0008270
Cme02g01912 1253 CDD Hr-like 607 750 - -
Cme02g01912 1253 SUPERFAMILY RING/U-box 1134 1193 - -
Cme02g01912 1253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1140 1191 IPR013083 -
Cme02g01912 1253 SUPERFAMILY Zinc hairpin stack 1084 1138 IPR037275 -
Cme02g01912 1253 ProSiteProfiles Zinc finger CTCHY-type profile. 1083 1146 IPR017921 -
Cme02g01912 1253 Pfam Zinc-ribbon 1194 1251 IPR039512 -
Cme02g01912 1253 ProSiteProfiles Zinc finger RING-type profile. 1147 1189 IPR001841 -
Cme02g01912 1253 ProSiteProfiles Zinc finger CHY-type profile. 1011 1080 IPR008913 GO:0008270
Cme02g01912 1253 CDD Hr-like 47 179 - -
Cme02g01912 1253 CDD RING-H2_Pirh2 1146 1189 - -
Cme02g01912 1253 Pfam Hemerythrin HHE cation binding domain 48 181 IPR012312 -
Cme02g01912 1253 Gene3D - 1218 1253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01912 K16276 K16276, BTS; zinc finger protein-like protein - csv:101212459 2441.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01912 Cme-Chr2:25553183 Cme10g00240 Cme-Chr10:1578014 3.33E-07 dispersed
Cme02g01912 Cme-Chr2:25553183 Cme02g01729 Cme-Chr2:24301944 7.58E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g484 . . . . . . . . . . Cma10g00172 . Car10g00161 . . . . . . . . . . . Cla06g01615 Cam06g1794 Cec06g1843 Cco06g1849 Clacu06g1753 Cmu06g1697 Cre06g2514 . . . . . . . . . Blo15g00295 . . . . . . . Cmo10g00185 . . . . . . Cpe18g00697 . . . . . . . . . . . . . . Lsi06g01496 Csa01g00206 Chy02g02353 Cme02g01912
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34