Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01919 ATGGATCCTCCCCTTGTTAACGAATCCTCCTTTTCTGCTGCGAATCCTTCTGCTTACAGCTTGGCTTCGATTTGGCCTTTTGGAGGGGAGCAGGGTGGGAGTGTATTGGGGCTTCGAATGGCTAATTTGGCTCAGAATCTTGGTGGGTTTCGTGAGAGCTCCACGAATCGTGATGGGTCAATGGAAGAATCGACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCTGAAGATGAATCTTCGAGAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAATTCAAATGATAAACGAATGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGATCCTAACTCAGCAGATGGTAAGAAGCTGGCCGAGCAAAGCCCGAAACCCGAACCACCGAAAGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCTAGAAGAGAGAAGATCAGTGAGAGAATGAAAATTTTGCAGGACCTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAACTTGAAGCTGTGAATTCCAGGATGAGCATAAGCCCTGGAATAGAAGGTTTTACTGTAAAAAATATCGTTAATCAACCATATGATGCAGCTGGGATATTATATGGTTCACAAGCAGCAAGAGATTATACCCAAGGTGCACAACCTGAATGGTTGCATATGCAAATCGGTGGAGGTTTTGAAAGAACGTCTTAG 831 44.16 MDPPLVNESSFSAANPSAYSLASIWPFGGEQGGSVLGLRMANLAQNLGGFRESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNDKRMKVVESRDENGGIKAEVDPNSADGKKLAEQSPKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMSISPGIEGFTVKNIVNQPYDAAGILYGSQAARDYTQGAQPEWLHMQIGGGFERTS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25599042 25602680 + MELO3C017140.2.1 Cme02g01919 321808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01919 276 MobiDBLite consensus disorder prediction 49 68 - -
Cme02g01919 276 MobiDBLite consensus disorder prediction 69 84 - -
Cme02g01919 276 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 275 IPR024097 GO:0006355
Cme02g01919 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 222 IPR036638 GO:0046983
Cme02g01919 276 Gene3D - 150 224 IPR036638 GO:0046983
Cme02g01919 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Cme02g01919 276 Coils Coil 200 220 - -
Cme02g01919 276 MobiDBLite consensus disorder prediction 85 103 - -
Cme02g01919 276 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Cme02g01919 276 SMART finulus 159 209 IPR011598 GO:0046983
Cme02g01919 276 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 275 - -
Cme02g01919 276 CDD bHLH_AtBPE_like 143 225 - -
Cme02g01919 276 MobiDBLite consensus disorder prediction 49 144 - -
Cme02g01919 276 MobiDBLite consensus disorder prediction 104 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01919 Cme-Chr2:25599042 Cme03g01315 Cme-Chr3:22669321 1.17E-96 dispersed
Cme02g01919 Cme-Chr2:25599042 Cme07g00258 Cme-Chr7:1678327 8.29E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40945 PF00010 HLH 2.20E-08 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01919 - - csv:101215588 533.102