Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01924 ATGGTGTCCGCGTCGACTCAGAAGAACATGCACTCTCTTCTTGTAGCTAATCTCACGAAGCTAACGATTCCTTCATCATCTTCTTCTCCTTCTTCATCCGCCGCCGCCGTTCATGACTTTGATTTCAACGATGTATTTGGCCCTACAAATCCCTCCCCGTCATCTTTTCCCGGGGACCCACAACACCATGAACAACAACAACCAGTGGTTATTCATAACAGATCTCATTCATTTGTGGGTCCTTCTCCCCGGTTAACTCCTCCAGCTTCTCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAGGAGGAAGAAGAAAATGACCTAGAAAACTCGACTCACGATGGAGCTCAAGAGGAGGACAAAAGGGTTGGTGAAACTGAAGATTGTGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGAGCGTTTGGTAAGGTCTTTTTGGTGAGGAAGAAAGGGAATTGTAAAGGAAACGGTTCTGATAATGATGGGATTTATGCTATGAAAGTGATGAGAAAAGATACTATTATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTTCGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTTCCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGAGTCTATGCAGCTGAGATCGTATCGGCTGTTTCGCATCTTCACAATTGTGGCATTGTGCACCGTGATCTCAAGCCCGAGAACATTCTCATGGATGCCGATGGACATGTAGTGCTTACTGATTTTGGACTGGCCAAGGAGATTGATGAATCAAGTCGGTCGAATTCGTTGTGTGGAACAACTGAATACATGGCTCCAGAAATCTTGCTTTCTAGAGGCCATAACAAAGATGCTGATTGGTGGAGCGTTGGAGTCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACGCACGCCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCGCCATACCTGAGCACTGAAGCTCACTCTTTGCTCAGAGGGCTGCTACAAAAGGAGCCGTCTAAAAGATTAGGTAGTGGACCAAAGGGAGGGGACGACATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGAGAGCTGCAACCGAAATTCAAACCGGATGTCAGTGGAAATGACTGCACAGCAAATTTTGACCATTGTTGGACAGCAATGCCCCCCGACGACTCACCAGCTCCGACCCCAACAGATGGTGGACACTTCCAGGGATATAGCTATGTTGCTCCTAACCTTTGGCTTTCATCATCTGGATAG 1443 44.91 MVSASTQKNMHSLLVANLTKLTIPSSSSSPSSSAAAVHDFDFNDVFGPTNPSPSSFPGDPQHHEQQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEENDLENSTHDGAQEEDKRVGETEDCGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGNCKGNGSDNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFFHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSRGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPKGGDDIKNHKWFRPVNWKKLECRELQPKFKPDVSGNDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNLWLSSSG 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25629556 25632688 + MELO3C017135.2.1 Cme02g01924 321813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01924 480 MobiDBLite consensus disorder prediction 47 67 - -
Cme02g01924 480 SMART serkin_6 147 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01924 480 ProSitePatterns Protein kinases ATP-binding region signature. 153 184 IPR017441 GO:0005524
Cme02g01924 480 SUPERFAMILY Protein kinase-like (PK-like) 144 471 IPR011009 -
Cme02g01924 480 MobiDBLite consensus disorder prediction 114 132 - -
Cme02g01924 480 Gene3D Transferase(Phosphotransferase) domain 1 235 430 - -
Cme02g01924 480 Gene3D Phosphorylase Kinase; domain 1 146 453 - -
Cme02g01924 480 MobiDBLite consensus disorder prediction 44 67 - -
Cme02g01924 480 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 479 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cme02g01924 480 PANTHER RIBOSOMAL PROTEIN S6 KINASE 6 478 - -
Cme02g01924 480 ProSiteProfiles Protein kinase domain profile. 147 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01924 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Cme02g01924 480 MobiDBLite consensus disorder prediction 97 137 - -
Cme02g01924 480 SMART pkinase_C_6 412 471 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cme02g01924 480 Pfam Protein kinase domain 148 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01924 480 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 478 - -
Cme02g01924 480 Pfam Protein kinase C terminal domain 432 469 IPR017892 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01924 Cme-Chr2:25629556 Cme09g01488 Cme-Chr9:20083134 6.88E-70 dispersed
Cme10g00124 Cme-Chr10:882921 Cme02g01924 Cme-Chr2:25629556 3.89E-55 dispersed
Cme02g01924 Cme-Chr2:25629556 Cme02g00269 Cme-Chr2:2258759 1.69E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64709 PF00069 Pkinase 3.40E-71 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01924 K04688 - csv:101214867 931.013