Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01933 ATGGCGACGGTTCCTGATCTCTTCCGCCGCAACAACGGACTTGTAGGGGTTTCCGACGAGTCGAAACAGAGGAGTTCGGGTTCGACTCAGCTTCATGTTCTTGCTGTTGATGATAGTCTAGTTGATCGGAAGGTTATTGAGCGGTTGTTGAAGATCTCGTCGTGTAAAGTGACTGTTGTTGAGAGTGGGAGAAGTGCTCTTCAGTATTTGGGTTTGGATGGGGAAACTAATTCTGTTCAGTTTAGTAGTGGCTTGAAGGTGAATCTCATTATTACAGATTACTCCATGCCTGAAATGACGGGATATGAACTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGTATTGACAGTTGTTTAAAGGAAGGGGCTGAAGAATTCATAGTAAAGCCAGTGAAATTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGGAGGGAAGAAAATTGATCTTAAGAGGAAACTCCATCTCGATCATGATCACAACCCCTTGTCTCCGGCCTCTCTAGGGCCATCGATGACAGCTTTCGACCAATGCCAAGGATTTAAGCAACGGTCGCCACCATCATTACGACCGTCGCCGATCATACGTTCGTCAAAGAAACCTAGGTTCCTCAATGGCAACTAA 687 44.25 MATVPDLFRRNNGLVGVSDESKQRSSGSTQLHVLAVDDSLVDRKVIERLLKISSCKVTVVESGRSALQYLGLDGETNSVQFSSGLKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENGGKKIDLKRKLHLDHDHNPLSPASLGPSMTAFDQCQGFKQRSPPSLRPSPIIRSSKKPRFLNGN 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25679801 25681772 - MELO3C017128.2.1 Cme02g01933 321822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01933 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR6 26 206 - -
Cme02g01933 228 CDD REC_typeA_ARR 33 155 - -
Cme02g01933 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 206 IPR045279 GO:0009736
Cme02g01933 228 SUPERFAMILY CheY-like 30 155 IPR011006 -
Cme02g01933 228 SMART REC_2 31 156 IPR001789 GO:0000160
Cme02g01933 228 Gene3D - 30 188 - -
Cme02g01933 228 Pfam Response regulator receiver domain 33 152 IPR001789 GO:0000160
Cme02g01933 228 MobiDBLite consensus disorder prediction 200 228 - -
Cme02g01933 228 ProSiteProfiles Response regulatory domain profile. 32 160 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01933 Cme-Chr2:25679801 Cme08g01358 Cme-Chr8:10713711 1.09E-50 dispersed
Cme06g00518 Cme-Chr6:3263120 Cme02g01933 Cme-Chr2:25679801 6.33E-08 transposed
Cme10g00026 Cme-Chr10:275521 Cme02g01933 Cme-Chr2:25679801 2.59E-45 transposed
Cme10g01256 Cme-Chr10:13333518 Cme02g01933 Cme-Chr2:25679801 6.33E-16 transposed
Cme10g00486 Cme-Chr10:3124244 Cme02g01933 Cme-Chr2:25679801 1.23E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40947 PF00072 Response_reg 1.60E-20 CL0304 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01933 K14492 - csv:101214143 406.757