Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01939 GCCCTAAAAGCACACACCTCATCAGCTCAGCTCAGCTCTCCCTTCTCCGTTGTCTCCTTCTTCTCTCTCTTTTTCTTCACTCAATTCTCTGTACAATTGGTTTCCTCCTCAAGTTTGTTCATTTCTGTATGTATGGGTGGCAATGGCAAATCCCGGTGGAAATTCCTCTTCCCCCATCGTCGTAATTCTAGGCTTCAATCCAACGATCCTCCTAAAGAGTTCCTTTGTCCTGTTTCTGGTTCGTTAATGGCGGACCCTGTTGTCGTTTCTTCTGGACAGACGTTTGAGCGTGTTTCTGCTCAGGTTTGTAGAAATTTAGGGTTCTCCCCTGTGTTAGATGATGGTTCTAAGCCGGATTTCACTACTGTGATTCCTAATTTAGCTATGAAGAAGACAATTCTTCATTGGTGTGAGAAGTCCGGTGCTCGGAATCTTCAACCGCCTGATTACACCTCCGTTGAAAGCCTTGTTACTGCATTGATGGAGAAGGAGAAACCTCAAGGCGGGATTGGGGATTCCTCGGATAGGGATTTGTTAGAGGGGGTATCGGATTTGCCGCCAGTGGATTTCTCGCACGCTGCGACGGAGTATGGACACCGTCCCGAACGGTTTTACACCAGCTCGTCGGAGGAGTCAGTCGTCGTTGGGGGAAGCCCGGGACCGTTCACGACTCGACCTGCGTGTTACTACTCGTTTTCGTCTTCTTCGTCGGAAACTGTGGAAAACGAAGCGCTCATCCAAACCCTAGGCCCGAATTCATCGATTTCCGAAGATGAGAAGAATTTTTTAACGAAGCTCGAGAGTCCCGATGTGTTTCAGCAAGAAGAAGGCGTTGTTTCGCTAAGAAAAATCACGAAAGCCGATGAGAATATTAGGGTTTCCCTTTGTACGCCTCGGATTCTTTTCTCTCTCCACCGGTTGATAAAGTCGAGATACCCCAAAGTGCAGATCAACGCCGTCGCCTCTCTTGTAAATCTCTCCCTCGAAAAGCCGAACAAATTAAAGATCGCGCGGTCAGGATTGGTTCCAGACTTAATCGATGTGCTTAAAGGAGGACATTCCGAAGCTCAAGAACACGCCGCCGGAGCGCTCTTCAGCCTAGCTTTAGAGGATGAAAATCGGATGGCGATCGGAGTTCTCGGCGCGCTACCGCCACTCCTTTACGCACTCCGATCGGAAAGCGAGCGAACTCGAGACGATTCAGCTCTGTGTCTCTACAACCTAACAATGATTCAGAGCAACCGAGTGAAGCTTGTCAAACTCGGCGCCGTAACGAATCTACTTTCCATGGTGAAATCAAGAAACTCGACGAATCGACTGCTATTAATCCTCTGTAACATGGCCGTCTGCCAGGAGGGAAGGTCCGCAATGCTAGACGCCAACGCCGTCGAACTTTTGGTCGGAATGCTGAGGGAGAAAGAGCTGAACTCCGAATCAACTCGCGAGAACTGCGTTGCGGCATTGTACGCACTGAGCTACGGAAGCATGAGATTCAAAGGATTGGCGAAGGAAGCTGGAGCCATGGAGGTTTTGAGGGAGATTGTCGAGAGAGGAAGCGAGAGGGCGAGAGAGAAAGCAAAGAAGATATTGGAGAGAATGAGAACGAGAGGGAGATTCGATGAAGACGACGATGACGATGACAATCCCGACGGCGAGTCGAGTTTTGAGAGAGGTGGACTCAGTTCCACTCGGTACCCAATCGGTGGTGGAAGATTTCCCAGCTCGGCCAATACGGTGCCGTTTTGA 1746 49.77 ALKAHTSSAQLSSPFSVVSFFSLFFFTQFSVQLVSSSSLFISVCMGGNGKSRWKFLFPHRRNSRLQSNDPPKEFLCPVSGSLMADPVVVSSGQTFERVSAQVCRNLGFSPVLDDGSKPDFTTVIPNLAMKKTILHWCEKSGARNLQPPDYTSVESLVTALMEKEKPQGGIGDSSDRDLLEGVSDLPPVDFSHAATEYGHRPERFYTSSSEESVVVGGSPGPFTTRPACYYSFSSSSSETVENEALIQTLGPNSSISEDEKNFLTKLESPDVFQQEEGVVSLRKITKADENIRVSLCTPRILFSLHRLIKSRYPKVQINAVASLVNLSLEKPNKLKIARSGLVPDLIDVLKGGHSEAQEHAAGALFSLALEDENRMAIGVLGALPPLLYALRSESERTRDDSALCLYNLTMIQSNRVKLVKLGAVTNLLSMVKSRNSTNRLLLILCNMAVCQEGRSAMLDANAVELLVGMLREKELNSESTRENCVAALYALSYGSMRFKGLAKEAGAMEVLREIVERGSERAREKAKKILERMRTRGRFDEDDDDDDNPDGESSFERGGLSSTRYPIGGGRFPSSANTVPF 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25729819 25731800 - MELO3C017121.2.1 Cme02g01939 321828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01939 581 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Cme02g01939 581 MobiDBLite consensus disorder prediction 538 581 - -
Cme02g01939 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 142 IPR013083 -
Cme02g01939 581 SUPERFAMILY RING/U-box 60 143 - -
Cme02g01939 581 SUPERFAMILY ARM repeat 262 532 IPR016024 -
Cme02g01939 581 Pfam U-box domain 71 139 IPR003613 GO:0004842|GO:0016567
Cme02g01939 581 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Cme02g01939 581 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 340 377 IPR000225 GO:0005515
Cme02g01939 581 Gene3D - 441 545 IPR011989 -
Cme02g01939 581 Pfam Armadillo/beta-catenin-like repeat 371 409 IPR000225 GO:0005515
Cme02g01939 581 PANTHER U BOX DOMAIN-CONTAINING 45 570 - -
Cme02g01939 581 SMART arm_5 450 493 IPR000225 GO:0005515
Cme02g01939 581 SMART arm_5 329 369 IPR000225 GO:0005515
Cme02g01939 581 SMART arm_5 370 410 IPR000225 GO:0005515
Cme02g01939 581 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 45 570 - -
Cme02g01939 581 CDD RING-Ubox 75 111 - -
Cme02g01939 581 Gene3D - 257 440 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01939 Cme-Chr2:25729819 Cme09g00333 Cme-Chr9:2834562 3.07E-168 dispersed
Cme12g01719 Cme-Chr12:23969629 Cme02g01939 Cme-Chr2:25729819 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01939 - - csv:101213423 983.4