Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01940 ATGGCTTCCGCTTCCCTTCTCGTAATTCTCCTCTTCGCCGTTCCCTGCTTAGTTGAATCCAAGCTTTCTCTTGATTATTACCAGAAAACTTGCCCCGATTTTGCTAAAATCGTTCATGAAACCGTCTCTAAGAAGCTTGTTACTAGCCCAACCACACCCGCCGCCACCATGCGTCTCTTCATCAATGATTGTTTTGTTGGAGGCTGTGATGGCTCTGTTCTCGTTGCCTCAAACGCCTTCAACCACGCCGAACGCGATGCCGAAATCAACCTCTCTCTTCCAGGAGACGCATTCGACGTCGTCGCTCGATCGAAGGTCGCTTTAGAGCTTTCCTGCCCGGGGGTCGTCTCTTGCTCCGACGTATTAGCACAAGCGACTCGCGATCTCATCGCGATTACAGGCGGACCGTCGTACAATGTTCAATTAGGGCGAAAAGATAGCTTGGTATCGAAATCTTCCGAAGTGGAAGGAAACATTCCGAAGATGAATCAAACAATTGACGAGATGATCAAACTATTCACAGCGAAAGGATTCACGATTCAAGAAATGGTAGCGTTATTCGGCGGAAGAACAATCGGCTTCTCAAATTGCAAGGAGTTCGGCGACCGGATCTTCAAGTTCAGTAAAACAACACCAACAGATCCAGAGATTCATCCGAAGTTCGCAGAGGCTTTGAAGAAGAGTTGTGAAGGATATGAGAAGAATCCAGGAATGTCGGCATACAGCGACGCCGTAACGCCGGGGAAATTCGACAATGTGTACTTCAAGAATCTGTTGAGAGGAATGGGATTATCGGCGTCGGAACATGCGTTGGTGAAGGATCCGAGGACGAGGAAATTTGTGGAGAAGTACGCCGGAAATCAAGCGTTGTTCTTCAAGGATTTTAGTGGCGCCATGGAGAAGTTGAGTGTTCGTGAAGTGAAAATCGGTGGGAAAGGAGAAGTGAGGAGGAAATGCGATGTGTTCAATTCAATTCAAACTTGA 984 47.66 MASASLLVILLFAVPCLVESKLSLDYYQKTCPDFAKIVHETVSKKLVTSPTTPAATMRLFINDCFVGGCDGSVLVASNAFNHAERDAEINLSLPGDAFDVVARSKVALELSCPGVVSCSDVLAQATRDLIAITGGPSYNVQLGRKDSLVSKSSEVEGNIPKMNQTIDEMIKLFTAKGFTIQEMVALFGGRTIGFSNCKEFGDRIFKFSKTTPTDPEIHPKFAEALKKSCEGYEKNPGMSAYSDAVTPGKFDNVYFKNLLRGMGLSASEHALVKDPRTRKFVEKYAGNQALFFKDFSGAMEKLSVREVKIGGKGEVRRKCDVFNSIQT 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25736686 25737890 - MELO3C017120.2.1 Cme02g01940 321829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01940 327 PANTHER - 6 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 Gene3D Peroxidase, domain 2 160 302 - -
Cme02g01940 327 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 ProSiteProfiles Plant heme peroxidase family profile. 21 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 PANTHER PEROXIDASE 41 6 327 - -
Cme02g01940 327 Pfam Peroxidase 40 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 Gene3D - 25 323 - -
Cme02g01940 327 SUPERFAMILY Heme-dependent peroxidases 22 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme02g01940 327 CDD secretory_peroxidase 21 322 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01940 Cme-Chr2:25736686 Cme09g00334 Cme-Chr9:2836544 4.45E-127 dispersed
Cme12g01717 Cme-Chr12:23962345 Cme02g01940 Cme-Chr2:25736686 2.49E-159 wgd
Cme02g01940 Cme-Chr2:25736686 Cme04g01925 Cme-Chr4:26977901 5.20E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01940 K00430 - csv:101213178 594.734