Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01950 ATGCATGGGCGTCGAGGTGAGGACTGGAAACGGATTCGGCACATGTGGACAGTCTCCACACCTGCTACTCAGATCCTAGAAGCAGATGGTTCTTCGTCATCGTCTTCGTCTGCACCTAATTCCTTCTGCAAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCCAAGATTCCCCTCCTTTTATTGGCATAATCCGGTGGTTGACGGCTGGTAAGGAGAATAAGTTGAAGTTAGGTGTAAATTGGCTTTATCGATCTTCTGAACTAAGGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCAAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTCCTTCCAAAGGACGTTGAGCTTCCACCAGGGATTTCGTCATTTGTGTGTCGAAGAGTGTATGACATAACAAATAAGTGTTTATGGTGGCTAACTGATCAGGATTATATTAATGAACGTCAAGAAGAAGTAGATCAATTGTTGTATAAGACAAGATTAGAAATGCATGCTTCAGTGCAACCTGGTGGCCGATCACCTAAGCCTACAAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACCACTGCCTTTCCTTCTCACACAAAAGGCAAGAAAAGAGAAAGGAGTGACCAAGGATTAGAATCTGTCAAACGAGAACGTGTCATCAAAACTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAACATTTTGAAGTCGGAGATTGCAAAATTTGCTGAAAAAGGAGGCTTAGTTGATTCTGAAGCTGTCGAGAAATTGGTGCAGCTTATGTTGACGGATAGAAATGACAAAAAAATTGATTTGGCTGGCAGATCAGCACTTGCAGGTGTTATAGCTGCTACAGATAAGGTTGAGTGCCTTAGTCAGTTTGTGCATCTCAAGGGTTTACCTGTACTTGATGAATGGCTTCAAGAGGTTCACAAGGGAAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGCGACAAATCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGTGCCCTTGATAAACTGCCTGTAAATCTTCCTGCTTTACAAATGTGCAACATTGGAAAGTCTGTGAATCATTTACGCTCGCATAAGAATTTGGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGTGTTGAAGCTGAAATGAACATTAATGATGCGAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGAACTCGGCCATCTGACGTTTCTCATGGAGGGAGGAATCAAGATGCATCCTCTGAAGTGGCCATGAAGAGCTCGGTTTCTCAGTTTTCTACGTCCAAATCTGCTTCAGTTAAGCTTGCCCAGGATGATAGTGTTACAAGATCTGCATCTGCCTCTCCTGGTTCTATGAAACCAGTTTTATCACCTGCATCAGCAAGCATTAACTCGAAAGATGGTTCATCCAGAAATCTGGGTGTTTGTGGTACAACTGATCTTGTTCAAGCTATTGCCAGAGATGAAAAGAGTAGCAGTTCCAGTCAGTCCCACAACAATAGTCAGTCATGTTCTAGTGAACATGGTAAAAGTGGTGGTTTAGGGAAAGAGGATGCAAGAAGCTCTACTGCTGGTTCAATGAGTGTGAATAAGATCTCGGGTGGTGGATCTCGCCAGCGCAAGTCAGTTAATGGATTTCCTGGTCCTGTTCTCTCCGGGGGTCAACGAGATGTAGGGTCGGGTAAAAGTTCTTTGCATAGAAACACAGTTTTGGAGAGATCATCACAATCTGGAATGACCTTTGAAAAGGCATCTGATGGCCCTATTGGTGAGGGGAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGTCGGAGTCCTGCACAGAGTGCTAGTGGAGGATCTTTTGAAGATCCTTCAACAATAAATAGCAGGGCTTCTTCTCCTCCACTATTGGAGAAACATGATCAACTTGATCACAGTAAGAGCGATACTTGTCATCCTAATATTACTGGGGATGTGAATGCAGAGTCCTGGCAGAATAGTGATGTAAAGGATACGGTGATTGGCGCTGATGGTGATGGTGGATCTCCTGCTGCTGTAAATGGTGAAGAGCGCTGTCGGGTTGGAGAAGATGCAACAATTTCAAAGGCTACTCCATCATCATTGGCGAATGATCATAAGAATGGAAAGTTAGATGAGGCATCTTTCAGCTCCATAAATGCTTTAATTGAGAGCTGTATTAAATGCTCTGAATCGAGTATGCCTACCTCACTCACGGATAATGTTGGAATGAACTTACTCGCAAGTGTAGCAGCCGTTGAAATGTCGAAGTCTGATTTTGTTTTGCCTTCCGATACACAAGGAAATATCACTGCAACGGACCGTTCTTCTAGAGGTAGTGATTGTAAGATCAAAGCATCTTGTCATGAAGAGGATGCTAGAGATATAGATGGTACCGAGCAGGGTGTAATGACCAGTTCCTTTGGAGGTAAAAATGTGGAAGGAAGGTCTGCTACACAATCTGAAGAGAAACTGGTTGGAGACCTGAATGGTCATTCAAAATCTTCTGGTGTGAACTTGCAACAAACTACTGTACCATTGGCAGATGGGTGTATGAAAATAAACAATCCTGGTGGTCCTGCCTCTCCTGCTAGTGTACCAGAGAAGGGCTTTGAGAGCAAGGGGGTTAAACCAGTTAAGGGCAGAAAGACAGCTGACGTAGTTGATGGAGATAGCAGCCCAGAATCAAAACCAAAACCGAGCAGTTCTTTTCCAGATGGTGGCATGGTTGGTGATGGTATCTCGAATCGGGAAGTTGAAATGGATGTTCCTGGTGAGTCTTTGCATCGGCAGCAAGAAGTTGAGGGCAATACAAATAATAGACTGAATGGTATTAGTACAGCAGATCAAAGGTTATCCTCCAAGTTGAACAGTGATTCTGCTAAATTAAGGAATGACGGACTACTTCAGGCTTCAGGCTCTTCAAGTGATCTGGTTTCTGTAAATGCAAGTGGGATGAAGGGTGAGAAGGATGATGAAACCACAGCTGATGTCAAACTTGAAAAACATCAAAGTGATTTAGACCCTATGCCTTCTGAGTCCCGAGGTTTAGGTGTCTTGTCTTCAGCTACCAACCATGAGGATGAGCATGTGGAGGAGAATTCGGAGCCTAAAGAGAACACAGAGAGAAGTGGAGGGCAGACACATCATGGGCAGTCTATTATTTCTCCTGTTCACGAAATGGAGCAGCCTAAGGCGTCCAAGAGATCCAAATTAGCTGGTGTTGAAACAGAAGAGGCAGAGGAGTCTACATCCACTGCTGCAGATGCTGGTTCCATGTCTGCTGTGGGGGTGTCAGATATGGATGCTAAGGTGGAATTTGATTTGAATGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGCAGCTTCACACCTTCTGGTTGTTTGACCACTGTTCAGTTAATTAGTCCATTGCCCCTTACTGTATCTAATGTGGCAAACAGCATTCCTGCTTCAATTACAGTTGCAGCTGCGGCGAAAGGAGGTTTCGTACCACCTGATGATCTATTGAGGAGCAAAGGGGAACTTGGTTGGAAAGGATCAGCAGCCACAAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTTTAGAAATGCCTCTAGGTCTTGCAACCACTCCACTTGCTGATGTTTCAGCCAGCAAAAATTCTCGACCCCCATTGGATATTGACTTGAATGTTCCCGATGAAAGGATTCTTGAGGACATGAATGCTCAGATGACTACTCAGGAGGTGGCTTCTAAGTCCGACCTGGGACATGGTATAGGCACCCCACAGGGACGTTGTTCTGGAGGACTAGATCTTGACTTGAACCGAGTTGATGATGCTCCTGATCCAAGCAACTTCTCCCTGAACAACTGTCGTAGAATTGAGGCTCCTCTTAGTGTTAAATCATCTACTGTTCCTCTCAATGACAAGGTGAATTTTCGTAGGGACTTTGATTTAAATGGTCCTATTGTCGATGAGGCCACTACTGAACCATCGATATTTCCTCAGCATGCCAGAAGCAGTATGCCAGCCCAGCCATCAGTTTCTGGCCTTTGGATGAACAATGCAGAAATGGGAAATTTCCCATCATGGTTTCCTCCGGGGAATGCCTATTCAGCTGTTGCAATTCCATCAATTTTGCCTGATAGAGCAGAACAGTCATTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAGCCCTGATGTCTTTAGAGGGCCAGTATTATCATCTTCTCCGGCAGTGCCATTTCCTTCTGCAGCTTTTCAATATCCTGTCCTGTCTTTTGGAAATAGCTTTCCTCTACCTTCAGCCACGTTTTCAGGTAATGCAACAGCATACGTTGATTCATCATCCGGCAGCAGGCTTTGCTTCCCAGCAGTCCCTTCACAGTTTTTAGGTCCTCCTGGTACAGTTTCAACGCCGTATCCAAGACCTTATGTTGTCAGTCACTCAGATGGCGGCAACAATACTAGTTCTGATAGTAGTCGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCCGGTCCTGTAGTTCCAGACGCTGAAGGAAGAGAGGAATCATCATCCTTGGTACCAAGGCAACTATCTGTTGCCAGTTCGCAGGCCACAGCCGAAGAGCATATGAGGGTTTACCAGCCAGCAATTGGCATAATGAAAAGAAAGGAACCAGAAGGAGGATGGGATGGGTACAAACAGTCATCATGGTCGTAG 4848 44.68 MHGRRGEDWKRIRHMWTVSTPATQILEADGSSSSSSSAPNSFCKGGRRISVGDCALFKPPQDSPPFIGIIRWLTAGKENKLKLGVNWLYRSSELRLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVELPPGISSFVCRRVYDITNKCLWWLTDQDYINERQEEVDQLLYKTRLEMHASVQPGGRSPKPTSGPTSTSQLKANSDSVQTTAFPSHTKGKKRERSDQGLESVKRERVIKTDEGDSANCRLENILKSEIAKFAEKGGLVDSEAVEKLVQLMLTDRNDKKIDLAGRSALAGVIAATDKVECLSQFVHLKGLPVLDEWLQEVHKGKIGSGGSPKDSDKSVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRPSDVSHGGRNQDASSEVAMKSSVSQFSTSKSASVKLAQDDSVTRSASASPGSMKPVLSPASASINSKDGSSRNLGVCGTTDLVQAIARDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGPVLSGGQRDVGSGKSSLHRNTVLERSSQSGMTFEKASDGPIGEGNSPKLIVKITNRGRSPAQSASGGSFEDPSTINSRASSPPLLEKHDQLDHSKSDTCHPNITGDVNAESWQNSDVKDTVIGADGDGGSPAAVNGEERCRVGEDATISKATPSSLANDHKNGKLDEASFSSINALIESCIKCSESSMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNITATDRSSRGSDCKIKASCHEEDARDIDGTEQGVMTSSFGGKNVEGRSATQSEEKLVGDLNGHSKSSGVNLQQTTVPLADGCMKINNPGGPASPASVPEKGFESKGVKPVKGRKTADVVDGDSSPESKPKPSSSFPDGGMVGDGISNREVEMDVPGESLHRQQEVEGNTNNRLNGISTADQRLSSKLNSDSAKLRNDGLLQASGSSSDLVSVNASGMKGEKDDETTADVKLEKHQSDLDPMPSESRGLGVLSSATNHEDEHVEENSEPKENTERSGGQTHHGQSIISPVHEMEQPKASKRSKLAGVETEEAEESTSTAADAGSMSAVGVSDMDAKVEFDLNEGFNVDDGKCSEPSSFTPSGCLTTVQLISPLPLTVSNVANSIPASITVAAAAKGGFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGLATTPLADVSASKNSRPPLDIDLNVPDERILEDMNAQMTTQEVASKSDLGHGIGTPQGRCSGGLDLDLNRVDDAPDPSNFSLNNCRRIEAPLSVKSSTVPLNDKVNFRRDFDLNGPIVDEATTEPSIFPQHARSSMPAQPSVSGLWMNNAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQSFPVVATNGPPRILGPTSGSSPYSPDVFRGPVLSSSPAVPFPSAAFQYPVLSFGNSFPLPSATFSGNATAYVDSSSGSRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGNNTSSDSSRKWGRQGLDLNAGPVVPDAEGREESSSLVPRQLSVASSQATAEEHMRVYQPAIGIMKRKEPEGGWDGYKQSSWS 1615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25799429 25806421 + MELO3C017110.2.1 Cme02g01950 321839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01950 1615 Pfam TFIIS helical bundle-like domain 361 410 IPR017923 -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 556 575 - -
Cme02g01950 1615 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1614 - -
Cme02g01950 1615 ProSiteProfiles TFIIS N-terminal domain profile. 327 413 IPR017923 -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 910 930 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 187 243 - -
Cme02g01950 1615 SMART BAH_4 47 162 IPR001025 GO:0003682
Cme02g01950 1615 SMART TFS2_5 333 412 IPR003617 GO:0005634
Cme02g01950 1615 MobiDBLite consensus disorder prediction 680 696 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 1062 1082 - -
Cme02g01950 1615 ProSiteProfiles BAH domain profile. 47 162 IPR001025 GO:0003682
Cme02g01950 1615 MobiDBLite consensus disorder prediction 886 1131 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 968 1019 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 592 617 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 639 666 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 1529 1545 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 1099 1115 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 1023 1046 - -
Cme02g01950 1615 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 276 414 IPR035441 -
Cme02g01950 1615 CDD TFIIS_I 335 411 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 223 243 - -
Cme02g01950 1615 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 315 424 IPR035441 -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 1568 1584 - -
Cme02g01950 1615 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1614 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 522 696 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 416 510 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 417 510 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 522 544 - -
Cme02g01950 1615 MobiDBLite consensus disorder prediction 1514 1584 - -
Cme02g01950 1615 Pfam BAH domain 49 156 IPR001025 GO:0003682
Cme02g01950 1615 MobiDBLite consensus disorder prediction 193 222 - -
Cme02g01950 1615 Gene3D - 34 260 IPR043151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01950 - - - csv:101210258 3010.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01004 Cme-Chr3:19083622 Cme02g01950 Cme-Chr2:25799429 1.28E-06 transposed
Cme04g00459 Cme-Chr4:3664044 Cme02g01950 Cme-Chr2:25799429 4.45E-11 transposed
Cme09g01762 Cme-Chr9:22094925 Cme02g01950 Cme-Chr2:25799429 3.32E-25 transposed
Cme02g01950 Cme-Chr2:25799429 Cme04g01920 Cme-Chr4:26886517 2.60E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40950 PF01426 BAH 1.50E-08 No_clan Cme TR