Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01957 ATGGATGCCAATGGGGTTCTTTCCTTTTCAGATGATTTGGTGTTTAAGAAGAAGAAAGATGAGGTTTTGAACAATAATAATGATAATGGCTGCTCTCATCTGCAAGTTCTTGAAGCTGAACATCAAAAAGATGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAACTCCATTATAATTAATGGTGACGATCCTCTCGATCATCCAACCATTCCTGGTTGGTTTTGTGAGCACTGCCCTCAATGGCCAGGTCAAGCACACTTCTTAAAGGTGGATAAAGTTTTGTTTCAAGGAAAGTCTGCGTATCAAGCCATGTTGGTCTTCCAGTCATCAGCATATGGAAAGGTGTTTGTGTTGGATGGAGCACTCCAACTCACTGAGAAAGATGAATGTGCTTACCAAGAAATGATTACCCACCTTCCTCTTTGCTCTATTCCTAACCCTAAAAAGGTTTTGGTGATCGGGGGAGGAGATGGTGGCATTCTAAGAGAGATTTCTAGGCATTCTTCCATCGAACAAATTGATATTTGTGAAATAGACACCATGCTCATTGATGTATACAAGAAGTACTTTCCAGAAATTGCAGTTGGATACAAAGATTATCGAGTGAATCTTCATATAATAGATGGAAGTGCTTTTTTGAGTTCTGTTCCACCAGGAAGCTACGATGCAATCATAGTCGATGCTTTTGATCCGATAAAGCCCGATGACGAGGTAGTGAGAAGTAAGTTGTTTGAGAACGTGGCAAAAGCACTTAAAGAAGGAGGAGTACTTTGTATTCAAGCAGAAAGCCTTTGGTTTCCTTCTCTTGACATTCAAATTTTGATCTCAAAATGCAAACAAGTTTTCAAAGGCTCAGTTCAATATGCTTGGACCATTGTTCCTGCTTACCCTAGTGGAGTAATTGGTTTCTTGTTGTGTTCAACTCAAGGACCAAAAGATGTTGACTTCAAAAATCCAATCAATCCCATTGATTCGAACAAGAACTTTGGAGTTGCAACCCAACCGTTGAAGTTTTACAACTCAGAGGTGCATTCAGCAGCGTTTTGTTTGCCATCATTTGCAAAGAAAGCAAAAGGATTAAGAAGCAATAACTAA 1104 39.22 MDANGVLSFSDDLVFKKKKDEVLNNNNDNGCSHLQVLEAEHQKDEEDEEEEEEEEEDNSIIINGDDPLDHPTIPGWFCEHCPQWPGQAHFLKVDKVLFQGKSAYQAMLVFQSSAYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGILREISRHSSIEQIDICEIDTMLIDVYKKYFPEIAVGYKDYRVNLHIIDGSAFLSSVPPGSYDAIIVDAFDPIKPDDEVVRSKLFENVAKALKEGGVLCIQAESLWFPSLDIQILISKCKQVFKGSVQYAWTIVPAYPSGVIGFLLCSTQGPKDVDFKNPINPIDSNKNFGVATQPLKFYNSEVHSAAFCLPSFAKKAKGLRSNN 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25845568 25849148 - MELO3C017103.2.1 Cme02g01957 321846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01957 367 CDD AdoMet_MTases 152 263 - -
Cme02g01957 367 Pfam Spermidine synthase tetramerisation domain 75 129 IPR035246 -
Cme02g01957 367 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 153 166 IPR030373 -
Cme02g01957 367 Gene3D Vaccinia Virus protein VP39 129 363 IPR029063 -
Cme02g01957 367 Hamap Polyamine aminopropyltransferase [speE]. 75 362 IPR001045 GO:0003824
Cme02g01957 367 MobiDBLite consensus disorder prediction 23 66 - -
Cme02g01957 367 MobiDBLite consensus disorder prediction 42 62 - -
Cme02g01957 367 Pfam Spermine/spermidine synthase domain 132 320 - -
Cme02g01957 367 Gene3D Spermidine synthase, tetramerisation domain 65 128 IPR037163 -
Cme02g01957 367 Coils Coil 34 59 - -
Cme02g01957 367 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 74 311 IPR030374 -
Cme02g01957 367 PANTHER SPERMIDINE SYNTHASE 69 361 - -
Cme02g01957 367 PANTHER SPERMIDINE/SPERMINE SYNTHASE 69 361 IPR001045 GO:0003824
Cme02g01957 367 TIGRFAM speE: spermidine synthase 76 356 IPR001045 GO:0003824
Cme02g01957 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 74 360 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01957 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101210007 652.899
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01957 Cme12g01707 CCT
Cme02g01957 Cme12g01707 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01957 Cme-Chr2:25845568 Cme09g01974 Cme-Chr9:23631657 1.24E-118 dispersed
Cme10g00511 Cme-Chr10:3310205 Cme02g01957 Cme-Chr2:25845568 1.60E-150 wgd
Cme12g01707 Cme-Chr12:23916762 Cme02g01957 Cme-Chr2:25845568 3.92E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g719 . . Bda06g00587 . Bpe12g00587 . . . Cmo13g00925 . Cma10g00133 . Car10g00126 . . Cpe20g00230 . Bhi02g00426 . . . . . . Cla06g01652 Cam06g1836 Cec06g1887 Cco06g1892 Clacu06g1796 Cmu06g1738 Cre06g2556 Cone2ag0896 . . . Lsi02g00359 Csa01g00837 Chy12g01282 Cme12g01707 Blo13g00052 Blo15g00274 . . Bpe07g00828 . . Bma08g00171 Sed08g2494 Cmo10g00140 . Cma13g00898 . Car13g00738 . . Cpe18g00837 Bhi08g01589 Tan05g2027 Cmetu12g1070 Lac10g0432 Hepe07g2240 . . Cla01g01286 Cam01g1442 Cec01g1480 Cco01g1447 Clacu01g1353 Cmu01g1257 Cre01g1279 Lsi06g01542 Csa01g00162 Chy02g02568 Cme02g01957
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106