Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01958 ATGCATAACATAGCGTATTCTCGATTAGGTGGACTTCAAAAATCCCTTACTCTATACAGGAAAGTTCCATGGTGGGATAAAATCTTAGAACCCGATTCAGAGTTTGTTGTTCGATGGAATCGTATTTTTCTCGTTACGTGTTTGATCGCTCTCTTCATCGACCCTCTTTACTTTTACCTTATCATCATCGGCGGCCCTGGTTGTATGCGTTTCAACACTCGTCTTGGTATCGTCGTCACTTTCTTCCGCACCATCGTCGATTTCTTCTCTCTGTTTCACATTTCTATGAAGTTTCGTACCGCCTTCGTCGCCCCTAATTCTAGGGTTTTTGGCCGTGGTGATCTAGTTATGGACCCTTCTGCCATTGCTATGCGCTACCTCAAGAAGGATTTTCTCATCGATCTTGCTGCTACACTTCCTCTGCCTCAGATTGTGATTTGGTTTGTGCTTCCAGCATTGAAAAATCCATCAGCATCCCATGCAAACCACACTCTTGCATTGATTGTCCTCATTCAGTATGCACCCAGGCTGTTTGTTATATTTCCTCTGAACAGACAGATCAATAAAACCACTGGTGCAATTGCCAAAACTGCGTGGGCTGGCGCTGCCTATAATCTCCTTCTCTATTTGCTTGCTAGTCATGTTATAGGAGCTGCATGGTATGTAGCATCAATTCAGCGTCAAGATGAGTGTTGGAAATTAGAATGTAGGAAGGAAATGAATAAAACTCATTCTCCTTCTTGTCAGCCTATTTTTCTTGATTGTGAAAGTTTGGATAAGCCTGAAAGAAAAGCTTGGCTAAGAAGAACTCACGTTCTTACAAATTGTGATGCATTCAATGATGAAAAGAATTTTGAGTTTGGAATGTTTGCTGATGCATTTACTGATGAAGTTGCTTCTGCAGTATTTTATGAGAAGTACTTCTACTGCCTTTGGTTTGGTTTAAAGAGTTTGAGTGCATATGGACAAAATTTAACGACAGGCACTTATAGTGGAGAAATTTTATTTAGCATTGTGATTTGCTCCATGGGATTGGTTCTGTTTTCACATCTCATAGGCCAAGTTCAGAGTTATCTGCAATCCACAACTGCTAGACTTGAACAGTGGAGAGTAAAACGAAGAGACACGGAGGAATGGATGAGGCATAGACAGTTACCGCTTCATTTGCAAGAACGAGTTCGTCGATTTGTTCAATATAAATGGATTGCAACTCGAGGTGTAGATGAAGAGTCGATCTTGCGCTCATTACCTTTGGATCTTCGTCGTCAAATTCAAAGACATCTTTCTCTTGCACTCGTTCGTCGTGTTCCCTTTTTCGCACAAATGGATGCACAGCTATTGGACGCCATTTGCGAGCGTCTCGTCTCATCCTTGAATACCAAAGATACATTCTTAACTAGAGAGGGAGATCCCGTAAATGAGATGCTCTTCATCATCAGAGGTCAACTAGAGAGCTCCACCACCAATGGTGGCAGGTCAGGATTCTTCAACTCCATCACTCTAAGACCCGGCGACTTCTGCGGCGAAGAACTACTAACATGGGCCTTAGTCCCAACCCCTAACTTAAACTTCCCCTCCTCAACCAGAACCGTGAAATCACTAACCGAAGTAGAGGCATTTGCACTTCGAGCCGAAGATCTAAAGTTTGTAGCCAGTCAGTTCAAGAGGCTCCATAGCAAGAAACTCCAACATGCTTTTAGATATTACTCCCATCAATGGAGGACTTGGGGATCTTGTTTCATACAAGCTGCTTGGAGAAGATATGTGAAAAGAAGGTTAGCTATGGAATTGGCAAGACAAGAAGAGCTTTATTACACAACCATTTTGGACCAAGATCATCATGGCAGCCATGGCAAGGAAATGATGGGAAGTGAAGGAGTTGGAGAATCCAGCCATGGGTCTAAAACTACTATTACTACAAATAACAAAGTACAAAACCTTGGAATAACAATGTTGGCTTCAAAATTTGCAGCAAATACAAGAAGAGGAGTTCATCAAAAATTGGCTGCACTTGAGTCTGATGCTGCTAGCTTGAAGATGCCTAAGCTGTTTAAGCCTGATGAACCTGACTTCTCTGCTTTCCAAAATGATAATTGA 2097 42.11 MHNIAYSRLGGLQKSLTLYRKVPWWDKILEPDSEFVVRWNRIFLVTCLIALFIDPLYFYLIIIGGPGCMRFNTRLGIVVTFFRTIVDFFSLFHISMKFRTAFVAPNSRVFGRGDLVMDPSAIAMRYLKKDFLIDLAATLPLPQIVIWFVLPALKNPSASHANHTLALIVLIQYAPRLFVIFPLNRQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYVASIQRQDECWKLECRKEMNKTHSPSCQPIFLDCESLDKPERKAWLRRTHVLTNCDAFNDEKNFEFGMFADAFTDEVASAVFYEKYFYCLWFGLKSLSAYGQNLTTGTYSGEILFSIVICSMGLVLFSHLIGQVQSYLQSTTARLEQWRVKRRDTEEWMRHRQLPLHLQERVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRVPFFAQMDAQLLDAICERLVSSLNTKDTFLTREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPTPNLNFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRRLAMELARQEELYYTTILDQDHHGSHGKEMMGSEGVGESSHGSKTTITTNNKVQNLGITMLASKFAANTRRGVHQKLAALESDAASLKMPKLFKPDEPDFSAFQNDN 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25852405 25856201 + MELO3C017101.2.1 Cme02g01958 321847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01958 698 Gene3D - 38 362 - -
Cme02g01958 698 MobiDBLite consensus disorder prediction 615 635 - -
Cme02g01958 698 ProSiteProfiles cAMP/cGMP binding motif profile. 438 568 IPR000595 -
Cme02g01958 698 Gene3D Helix hairpin bin 364 428 - -
Cme02g01958 698 SUPERFAMILY Voltage-gated potassium channels 31 360 - -
Cme02g01958 698 Pfam Ion transport protein 39 365 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme02g01958 698 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 694 - -
Cme02g01958 698 CDD CAP_ED 438 569 IPR000595 -
Cme02g01958 698 Gene3D Jelly Rolls 436 556 IPR014710 -
Cme02g01958 698 SUPERFAMILY cAMP-binding domain-like 367 563 IPR018490 -
Cme02g01958 698 SMART cnmp_10 438 569 IPR000595 -
Cme02g01958 698 Pfam Cyclic nucleotide-binding domain 461 549 IPR000595 -
Cme02g01958 698 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 1 694 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01958 Cme-Chr2:25852405 Cme04g00327 Cme-Chr4:2616233 0 dispersed
Cme02g01958 Cme-Chr2:25852405 Cme04g01904 Cme-Chr4:26747348 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01958 K05391 - csv:101209760 1337.78