Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01959 ATGGCAGCTGCTCGTAGAGGAATCTCTTCTTTACTCTCTCGTTCTATCTTAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTGTTAATGGGTTTGGTTCTCTTCTTCATTCTCATGGAAGAGTTTCAAGGTTCCTTGGAAGAGGAAATGGATTTGGCACATCTGCTTTGGCAGAGGAAGAACTTATCACTCCTCCTGTTCAGATAAATTACACTCAAAATCTGATCAATGGCCAGTTTGTTGATTCTGCATCCGGAAAAACGTTTCCAACTTACGATCCTCGCACTGGGGAAGTGATTGCTCATGTTGCCGAGGGTGATGCTGAGGATATCAACCGTGCAGTATCAGCTGCACGAAAGGCTTTCGACGAGGGGCCATGGCCAAGAATGTCTGCTTATGAACGATCAAGGATATTGTTACGGTTTGCAGATTTGATTGAGAAACATGCTCCTGAACTTTCAGCATTGGAAACATGGAACAATGGGAAACCTTACGAACAATCGCTTAAATCTGAATTACCGTTACTCGTACGCTTGTTTCACTATTATGCAGGCTGGGCCGACAAAATCCATGGATTAACAGTTCCAGCTGATGGAAATCATCATGTTCAAGTATTGCATGAACCAATTGGAGTTGCAGGACAAATAATTCCATGGAACTTTCCTCTTATTATGTTTGCTTGGAAAGTTGGTCCTGCTTTAGCTTGTGGCAACACCATTGTCCTAAAAACTGCAGAGCAAACACCTCTGACTGCTCTTTATGTGGCTAAGTTATTACATGAGGCAGGTCTTCCTCCAGGGGTTCTGAATGTCGTTTCAGGCTATGGTCCGACCGCAGGTGCTGCTCTTGCTAGCCATATGGATGTGGACAAGCTAGCTTTCACAGGATCGACAAGCACAGGAAAAGTTGTGCTTGAATTGGCAGCAAAGAGCAATTTGAAGCCAGTGACACTAGAGCTTGGAGGGAAATCACCTTTCATTGTTTGTGAGGATGCAGATGTTGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGTTGTGCTGGGTCTCGTACCTTTGTGCACGAGCGCGTATACGAAGAATTTGTCGAAAAGTCGAAGGCACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGCGTTGAACAGGGTCCTCAGATTGACTTGGAGCAATTCGAAAAAGTCCTAAGATATATCAAATCTGGCATTGAAAGCAACGCTACTTTGGAATGTGGGGGTGGTAGACTTGGGTCCAAGGGATACTTCATCGAGCCAACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCAAAGGATGAAATCTTTGGTCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTAATTCATAGGGCAAACTCAACTCGTTACGGTCTAGCATCAGGAGTTTTCACTTCGAACATCGACACAGCCAACACACTAACACGAGGGTTGAGAACGGGGACCGTGTGGGTCAATTGCTTCGACATATTCGATGCCGCGATACCATTTGGCGGGTATAAGATGAGTGGAATAGGAAGGGAGAAGGGAATTTACAGCCTCCAAAACTACTTACAAGTGAAGGCTGTTGTTACACCTCTCAAGAATCCAGCATGGTTGTGA 1665 44.32 MAAARRGISSLLSRSILASSSSSSSSSSSTVNGFGSLLHSHGRVSRFLGRGNGFGTSALAEEELITPPVQINYTQNLINGQFVDSASGKTFPTYDPRTGEVIAHVAEGDAEDINRAVSAARKAFDEGPWPRMSAYERSRILLRFADLIEKHAPELSALETWNNGKPYEQSLKSELPLLVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTIVLKTAEQTPLTALYVAKLLHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYEEFVEKSKARAQRRVVGDPFKKGVEQGPQIDLEQFEKVLRYIKSGIESNATLECGGGRLGSKGYFIEPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIHRANSTRYGLASGVFTSNIDTANTLTRGLRTGTVWVNCFDIFDAAIPFGGYKMSGIGREKGIYSLQNYLQVKAVVTPLKNPAWL 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25859064 25862430 + MELO3C017100.2.1 Cme02g01959 321848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01959 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 88 544 IPR016162 GO:0016491
Cme02g01959 554 Pfam Aldehyde dehydrogenase family 82 544 IPR015590 GO:0016491
Cme02g01959 554 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 320 327 IPR029510 GO:0016491
Cme02g01959 554 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 348 359 IPR016160 GO:0016491
Cme02g01959 554 SUPERFAMILY ALDH-like 70 548 IPR016161 GO:0016491
Cme02g01959 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 326 515 IPR016163 GO:0016620
Cme02g01959 554 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 45 554 - -
Cme02g01959 554 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 45 554 - -
Cme02g01959 554 CDD ALDH_F2BC 71 546 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01337 Cme-Chr2:19320252 Cme02g01959 Cme-Chr2:25859064 0 dispersed
Cme02g01936 Cme-Chr2:25707686 Cme02g01959 Cme-Chr2:25859064 1.28E-119 dispersed
Cme02g01959 Cme-Chr2:25859064 Cme05g01785 Cme-Chr5:26836976 0 dispersed
Cme12g01755 Cme-Chr12:24219398 Cme02g01959 Cme-Chr2:25859064 2.84E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01959 K00128 - csv:101209430 1047.73