Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01961 ATGAAAGAGAACAATGATGGGTTTGTTCGTGCGGATCAGATTGATCTCAAGAGCTTAGATGAACAGCTTGAGAGGCATCTTAGTAGAGCTTTGACTATGGAGAAGAACAAGAAGAAAGATGAAGATACCGGCAATAGCTTTCTCACTTCTGCACCTATCGCTCGTAGTAGGTCTACTAAAGTTGCTGCTAAGGACCGGCTGGAGTGGGAGATCGATCCCTCTAAATTGATTATCAAGAGCGTCATTGCTCGTGGTACTTTTGGCACTGTCCACCGCGGCGTTTATGACGGACTAGATGTCGCCGTCAAGTTGCTGGATTGGGGAGAAGAAGGTCACAGGACAGAAGCTGAAATTGCTTCACTAAGGGCGGCTTTTAAACAAGAAGTTGCTGTTTGGCATAAACTAGAGCATCCAAATGTTACTAAGTTTATAGGGGCAACAATGGGCTCAGCAGAGTTACAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGCAACATATGTTGTGTTGTGGTGGAATATCTTGCCGGGGGTGCTCTTAAATCTTATCTCATAAAAAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGCTGGCCCTTGATCTTGCTAGAGGGCTGAGTTACCTTCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAACATGCTATTGGACAAAACACGTACAGTCAAAATTGCTGATTTTGGTGTTGCTAGAGTTGAGGCCTCAAATCCCAATGACATGACTGGGGAGACCGGGACACTTGGTTACATGGCTCCAGAGGTCCTCAATGGCAACCCATATAACAGGAAATGTGATGTGTACAGCTTCGGTATCTGCCTGTGGGAAATTTATTGCTGTGACATGCCATATCCCGACCTTAGTTTCTCTGAAGTAACCTCTGCCGTGGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCTAGCTCTCTAGCAAATGTAATGAAGCGTTGCTGGGATGCAACCCCAGACAAGCGACCCGAGATGGATGAAGTAGTTTCCATGTTGGAGGCCATTGACACTTCCAAGGGTGGAGGTATGATTCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGGCCCTAA 1140 45.7 MKENNDGFVRADQIDLKSLDEQLERHLSRALTMEKNKKKDEDTGNSFLTSAPIARSRSTKVAAKDRLEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25864064 25867810 - MELO3C017099.2.1 Cme02g01961 321850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01961 379 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01961 379 CDD STKc_MAP3K-like 82 350 - -
Cme02g01961 379 Gene3D Transferase(Phosphotransferase) domain 1 177 366 - -
Cme02g01961 379 PRINTS Tyrosine kinase catalytic domain signature 173 186 IPR001245 GO:0004672|GO:0006468
Cme02g01961 379 PRINTS Tyrosine kinase catalytic domain signature 211 229 IPR001245 GO:0004672|GO:0006468
Cme02g01961 379 PRINTS Tyrosine kinase catalytic domain signature 277 299 IPR001245 GO:0004672|GO:0006468
Cme02g01961 379 PRINTS Tyrosine kinase catalytic domain signature 321 343 IPR001245 GO:0004672|GO:0006468
Cme02g01961 379 PANTHER - 1 373 - -
Cme02g01961 379 Pfam Protein tyrosine and serine/threonine kinase 78 350 IPR001245 GO:0004672|GO:0006468
Cme02g01961 379 SMART serkin_6 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01961 379 MobiDBLite consensus disorder prediction 30 44 - -
Cme02g01961 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Cme02g01961 379 Coils Coil 16 36 - -
Cme02g01961 379 SUPERFAMILY Protein kinase-like (PK-like) 56 350 IPR011009 -
Cme02g01961 379 MobiDBLite consensus disorder prediction 30 50 - -
Cme02g01961 379 Gene3D Phosphorylase Kinase; domain 1 66 159 - -
Cme02g01961 379 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01961 Cme-Chr2:25864064 Cme06g00588 Cme-Chr6:3781618 1.94E-173 dispersed
Cme04g00415 Cme-Chr4:3302718 Cme02g01961 Cme-Chr2:25864064 4.43E-19 transposed
Cme02g01961 Cme-Chr2:25864064 Cme04g01893 Cme-Chr4:26601405 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64710 PF07714 PK_Tyr_Ser-Thr 3.70E-63 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01961 - - csv:101209182 766.148