Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01963 ATGGCTGCTCGAGGGGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCAATCAATTGGAAGAAGTATCATACTTGTGTACATCCCTTGCATATATGGATTGTGGTTGATTATACTACCGTCTTTGTTTTTCGCCTGCTGATGTTTGTGGATAATGGACTTGCCGCTGGCATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTTCTTGCACTTCTGCTATATCCGTTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGGTTCCTAATTTGGTTACTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGTTTCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCTGGACAAGAAACAAGGGTAATGGGCCAAGATGCCGCTGCATACCATCCTGGACTTTACTTGACTCCTGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCGAATTTAGGTTAAAGGCCGTTCCAACGGATTGCAGTGAATGCCCTATCTGCTTAGAAGAGTTTCACGTAGGGAACGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTTAACGTGAAATGCCCTAGATGTCGTTGCTCGGTCTTCCCAAACCTTGATCTCAGTGCTCTGTCCAATCTTCGTTCTGATACTGATAGACCATCTGCAAGTGTTGTTACCGCCAACCGTTATGTGGGATCTCAACCTTCCAGCCAGAGTTATCTAGTGAGATTGCAAGGTCTGCTTCGACCTGTTCGCACCGAAAACAATGATGCACACGGTGATTTAGGGCCTGCTAGTGCTTTAGAAGCCGCTGAGAATGGGTCTGCACATGACCAAACCATACCAGAACGGTCTCCTGTAAGACCGTTGTCTTTGATTCAGTCCACATCACAAGTCTAG 1134 46.56 MAARGVDFKWYDGFFLSMLATSVVIVSINWKKYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGFPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPEFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVTANRYVGSQPSSQSYLVRLQGLLRPVRTENNDAHGDLGPASALEAAENGSAHDQTIPERSPVRPLSLIQSTSQV 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25888628 25892848 + MELO3C017097.2.1 Cme02g01963 321852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01963 377 SUPERFAMILY RING/U-box 217 284 - -
Cme02g01963 377 Pfam Ring finger domain 234 276 IPR001841 -
Cme02g01963 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cme02g01963 377 SMART ring_2 235 275 IPR001841 -
Cme02g01963 377 MobiDBLite consensus disorder prediction 348 377 - -
Cme02g01963 377 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cme02g01963 377 CDD RING-H2_RNF111_like 234 278 - -
Cme02g01963 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 357 - -
Cme02g01963 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 357 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01963 Cme-Chr2:25888628 Cme05g00008 Cme-Chr5:72377 3.57E-14 dispersed
Cme04g02142 Cme-Chr4:28718976 Cme02g01963 Cme-Chr2:25888628 1.91E-12 transposed
Cme12g01701 Cme-Chr12:23884631 Cme02g01963 Cme-Chr2:25888628 3.32E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01963 K16284 - csv:101208939 770.385