Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01983 ATGGCGGGTCTTTACGGACTCCATCCCCTCGCCGCTAACTCTTATCACTCATCATCAACGACGACGTTGGAGACTCTTCCCATTCCGACGCATTCTGCGGATTATTCTCACCCTCTTCCGGATTTTGAAGCCGAACATTCCAGGCCGTTTTCGTCCGTGGCCTCCAAAACTGCTATTACGGCGGAGACGAAAACAGCTTGTGCTATTCCCGAGGAGGAGTCCGCCGGTGTAATTAGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAGCTCGTCGATGCGTTTTTGAACTGCCAAAAGGTCGGCGCGCCGCCGGAAGTTGCTAAAATTCTAGACCAATGCAACCGTGGAAATAACATCATCGGCAAAGAAAATCCCTGCGTTTCAACTTGCTTGGGTACTGATCCCGAACTCGACGAATTCATGAGAATAATCTGCGGGCTATTAGCCAAATACGAGCTGGATCTGTGTCAGCCCTTGGAGGAAGCATCTTCCTTCCTCAAGAACATGGAAATGCAGTTAAATTTGCTCTGCGAGGGCACCAACAGAGGCTACGTTTCCTCCGGTTCGTCATTCTCCCTCTCTTTCATAATAAGACAATCTGTTGATTTGATTTCTTATTTTATTGAGTAA 633 47.87 MAGLYGLHPLAANSYHSSSTTTLETLPIPTHSADYSHPLPDFEAEHSRPFSSVASKTAITAETKTACAIPEEESAGVIRAKIASHPLYPKLVDAFLNCQKVGAPPEVAKILDQCNRGNNIIGKENPCVSTCLGTDPELDEFMRIICGLLAKYELDLCQPLEEASSFLKNMEMQLNLLCEGTNRGYVSSGSSFSLSFIIRQSVDLISYFIE 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26093307 26094436 + MELO3C026289.2.1 Cme02g01983 321872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01983 210 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 188 - -
Cme02g01983 210 SMART KNOX1_2 76 120 IPR005540 GO:0003677|GO:0005634
Cme02g01983 210 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Cme02g01983 210 Pfam KNOX2 domain 132 178 IPR005541 GO:0003677|GO:0005634
Cme02g01983 210 Pfam KNOX1 domain 78 116 IPR005540 GO:0003677|GO:0005634
Cme02g01983 210 PANTHER ELK DOMAIN, HOMEOBOX KN DOMAIN, HOMEODOMAIN-LIKE PROTEIN-RELATED 1 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01983 - - - cmo:103502408 422.165
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01983 Cme-Chr2:26093307 Cme05g01544 Cme-Chr5:24801281 2.34E-27 dispersed
Cme10g00541 Cme-Chr10:3457746 Cme02g01983 Cme-Chr2:26093307 6.83E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g773 . . . Bda15g00550 . . . . . . . . . Car11g00082 . . Cpe04g01564 . . . . . . . Cla06g01668 Cam06g1854 . . . Cmu06g1753 . . . . . . . . . . . . . . . . Bma08g00095 . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01561 Csa01g00143 . Cme02g01983
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000818 2 3 3 3 3 3 4 2 2 3 3 2 3 2 3 3 4 4 4 3 3 3 2 4 4 3 3 3 3 3 90