Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01985 TCCCCCACTCAGGAATTGGGTCCACCGAACGCGGCTGATTTGTTTGTGTGGGAAGAAGTTTACTTAGGGTTGCAAATTCTTCAGAAAGGGACGGTGGGTTGCCAGAATTTGCTGATACAAATTCTTTCTAATTTTGACCTCTCCACAAAGTGGGTCCAAGTTGAGCTATTCTTCCGGTGTGAAGCACGAAACGGGTCTTCTTCAGGTGAATCTCCCCAATCTCTTCTAAACGGGAACTCAAGAGTTGAAGCTGCATTTGGAGTCCAACATTGTCTATACGCATACCATATTGAGCCCAATATTGTTTATGCTCATCCCATATTTGGAGTCCAACATTATTTATGCTCATCCCATATTTGGAGGCCAACATTGTTTATAGTCCACTTATCTCAGATGATATCTACTGACATTGTGGACTTGTCAAGTGACGATGAGGAAGGATCAAACTTGAAAGCCGTGAAGTTGGAGCCAGAAGTTGATGGCGGTGTGGTCTTATCAAAAGAGCACACAAAGAAGAATACCATCAAAAAGAAGAATACCATCAAACAGGAAAAACTAAATAATGAATTTGTTAGTCAAGGATTTGATGAGAATAGGAGCCCGAATGTTTGGAGTGCTGGTCAGAGTAGCTCTAGTATATTGGATCAGGTGCCATCTCCAGCTGATGATTCTGGCCTTACATCCCCATCTCCTTTGTGTCCTGCACCAGTTTGTCGACAATTCTGGAAAGCTGGGAACTATAATGATGGAGTTGCTTCTAATGTCACCGTTCAAAGTTCCAAGGGCCATCTCCATGTCCACCCTATGTTCCTTCATTCAAATGCTACTTCACACAAATGGGCTTTTGGAGCTGTTGCAGAGCTGCTTGATAACGCAGTTGATGAGATCCCCAACGGAGCTACCTTTGTCAATGTGGATAAAATCTTGAATGCAAGAGATGGAAGTCCTGCTTTGTTAATTCAAGACGATGGAGGTGGAATGGATCCTGAAGCGATGAGGAGGTGTATGAGCTTTGGGTTCTCAGATAAGAAGTCAAAATCAGCTATCGGACAATATGGAAATGGTTTCAAAACCAGCACTATGAGACTTGGTGCAGATGTTATTGTTTTCAGTCGGCACGTGAATAATAGGTCCAGCGTATCAACGCAGAGTATTGGTCTTCTATCTTATACATTTTTGACCCGTTCAGGCTACAACAGAATCGTAGTGCCTATGGTAGATTATCAATATAACACATCAAGTGGCAAAATGGAAATATTGCATGGGAGGGAACGTTTTACGTCTAACCTTTCCATACTTCTACAGTGGTCTCCGTACTCATCTGAGTCTGAACTTCTTAAGCAATTTGATGATATCGGATCTCATGGCACAAAAGTAATCATCTATAATTTGTGGTATAATGGAGATGGCAGAATGGAGCTGGACTTCGATACAGATCAGGAGGATATTTGCATTGACGGAGATGTAAAAAAAATGGCTGCTCTCCCCGCATCAAAGGCAATCAATGAGCGGCACATTGCTAATCGATTGCAATATTCTCTCCGTGAATATTTATCTATATTGTATTTGCGGATGTCTGAAAATTTCAAGATAGTATTGCGCGGGAGGGTTGTTCTGCATCATAATCTTGCTGATGATCTCAAATATATCGAATACATTTTGTATAAGCCTCATAGTGGTGGACATGTGGAGGGTGTGGTTGTTACTACAATTGGGTTCCTGAAGGAGGCCCCAGATGTCAATATACATGGTTTTAATGTTTACCACAAAAATCGTTTGATTCTGCCATTCTGGAGGGTTGTAAGCTATTCAGACTGTAGAGGAAGAGGCGTTGTTGGTATTCTCGAAGCAAATTTTATTGAGCCTACACATAATAAACAAGACTTTGAGAGAACTTCTGTTTTCCAGAAGCTTGAAGCTCGTTTGAAAGATATGACTTGGGAATACTGGGATTGTCATTGCGGACTTGTTGGGTATCAAGTTAGAAAACAATTCCGTGTGACAACACCCTCAAAAACACCATTCAACATAACAGTACCTGCTGGCACGGAACATCCTCAGATGTTGAATCAACGTGTTCCATTGGAACATCTGAGGATGTTGAATGAACGGGTCCCATTTACGGTCAAAGAAACTAAAGGAAGACCTGAACAATTTACCCTGGAAACACCCGGAAAATCTAGAGAAGGAGTATGTATGAAGAGAAAGGCAGATGTTCTCACAGAAGATGAACAGTCTGTCCGTGCTCGTCAACAGAACAACCAACAGGATAACGTTTTGTTGGAACAAAATATGAAGCTTCGTGTAAACTGTTCAGAGTATGAAAAGCGGGAGGAAGAACTTAATCTCAAGGCAACACAACTTAGGAGCAACATTCAGGAAGTTGAACTCGAGATAAAGCGTCTGTTGGATGAGTTAAAATCTTTAGAAGCGGTTAAGGTTGAATGA 2448 41.63 SPTQELGPPNAADLFVWEEVYLGLQILQKGTVGCQNLLIQILSNFDLSTKWVQVELFFRCEARNGSSSGESPQSLLNGNSRVEAAFGVQHCLYAYHIEPNIVYAHPIFGVQHYLCSSHIWRPTLFIVHLSQMISTDIVDLSSDDEEGSNLKAVKLEPEVDGGVVLSKEHTKKNTIKKKNTIKQEKLNNEFVSQGFDENRSPNVWSAGQSSSSILDQVPSPADDSGLTSPSPLCPAPVCRQFWKAGNYNDGVASNVTVQSSKGHLHVHPMFLHSNATSHKWAFGAVAELLDNAVDEIPNGATFVNVDKILNARDGSPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSAIGQYGNGFKTSTMRLGADVIVFSRHVNNRSSVSTQSIGLLSYTFLTRSGYNRIVVPMVDYQYNTSSGKMEILHGRERFTSNLSILLQWSPYSSESELLKQFDDIGSHGTKVIIYNLWYNGDGRMELDFDTDQEDICIDGDVKKMAALPASKAINERHIANRLQYSLREYLSILYLRMSENFKIVLRGRVVLHHNLADDLKYIEYILYKPHSGGHVEGVVVTTIGFLKEAPDVNIHGFNVYHKNRLILPFWRVVSYSDCRGRGVVGILEANFIEPTHNKQDFERTSVFQKLEARLKDMTWEYWDCHCGLVGYQVRKQFRVTTPSKTPFNITVPAGTEHPQMLNQRVPLEHLRMLNERVPFTVKETKGRPEQFTLETPGKSREGVCMKRKADVLTEDEQSVRARQQNNQQDNVLLEQNMKLRVNCSEYEKREEELNLKATQLRSNIQEVELEIKRLLDELKSLEAVKVE 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26109608 26130893 + MELO3C026286.2.1 Cme02g01985 321874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01985 815 Gene3D - 270 466 IPR036890 -
Cme02g01985 815 PANTHER HISTIDINE KINASE-, DNA GYRASE B-, AND HSP90-LIKE ATPASE FAMILY PROTEIN 132 811 - -
Cme02g01985 815 MobiDBLite consensus disorder prediction 198 228 - -
Cme02g01985 815 Coils Coil 764 812 - -
Cme02g01985 815 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 283 381 - -
Cme02g01985 815 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 281 483 IPR036890 -
Cme02g01985 815 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 132 811 IPR045261 GO:0016887
Cme02g01985 815 MobiDBLite consensus disorder prediction 198 226 - -
Cme02g01985 815 Pfam Morc6 ribosomal protein S5 domain 2-like 512 650 IPR041006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01985 - - - cmo:103502402 1356.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01985 Cme-Chr2:26109608 Cme07g01993 Cme-Chr7:25031560 5.85E-147 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g776 . . . . . . . . . . Cma10g00121 . Car10g00108 . . . . Bhi02g00461 Tan09g2260 . . Hepe09g0210 . . Cla06g01670 Cam06g1859 Cec06g1908 Cco06g1913 Clacu06g1815 Cmu06g1756 Cre06g2573 . Cone16ag0091 . . . . . . . . . . . . . Bma08g00093 . Cmo10g00125 . . . . . . Cpe18g00848 . . . . . . . . . . . . . . Lsi06g01563 Csa01g00140 . Cme02g01985
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003763 0 11 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 6 2 2 46