Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01992 ATGGCAGACCCAACGGCTTCTTCGGCTTCAGACAAGGGACAGGAACCCTCTTCTTCATCGGACGAGAAAAATACTAAACGGGATTTTTCCACTGCAATTTTGGAACGGAAGAAATCTCCAAATCGCTTAGTTGTTGATGAGGCTATAAATGATGATAACTCTGTTGTTTCTTTGCATCCTGCCACCATGGAAAAGTTGCAGTTCTTTAGAGGAGATACTATTTTATTAAAGGGGAAGAAGCGGAGAGATACAGTGTGTATTGTACTTGCTGATGAACAATGTGAAGAGTCAAAAATCAGAATGAATAAAATTGTAAGAGGTAATCTCAGAGTTCGTCTTGGAGATGTTGTATCTGTCCATCAGTGTCCTGATGTGAAGTATGGAAAGCGGGTTCATATCCTCCCTATTGATGATACAATAGAGGGTGTTACTGGCAACCTATTTGATGCATATTTGAAACCTTATTTCTTGGAAGCATATCGACCGGTAAGGAAGGGTGACCTGTTCTTAGTCCGGGGTGGAATGAGAAGTGTTGAGTTCAAGGTCATAGAAACGGATCCTGGTGAATACTGTGTTGTTGCACCTGATACCGAGATCTTCTGTGAGGGAGAACCCATCAAACGTGAGGATGAGGAGAGATTAAATGAAGTTGGATATGATGATGTTGGAGGTGTCAGGAAGCAAATGGCTCAGATCCGAGAATTAGTCGAGTTACCACTTAGACACCCACAACTCTTCAAATCAATTGGTGTTAAGCCTCCAAAAGGGATATTGCTATATGGGCCTCCTGGTTCTGGAAAAACTCTTATAGCAAGAGCTGTTGCTAACGAGACAGGTGCCTTCTTCTTTCTTATTAATGGGCCGGAAATAATGTCAAAGTTAGCTGGTGAGAGCGAAAGTAATCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCCCCCTCGATTATATTTATTGATGAGCTTGATTCCATTGCTCCAAAGAGGGAGAAAACGCATGGAGAAGTGGAAAGACGGATTGTGTCCCAACTTCTTACCTTGATGGATGGCCTGAAGACTCGAGCACATGTTATTGTTATTGGAGCAACTAATAGACCCAATTCAATTGACCCTGCTTTGAGGAGATTTGGAAGATTTGATCGGGAGATTGATATTGGTGTACCCGATGAAGTAGGACGATTGGAAGTCCTTAGGATCCATACAAAGAACATGAAACTTGCAGAGAATGTTGATCTTGAGAGAGTTGCAAGGGATACACATGGTTATGTTGGTGCCGACCTAGCCGCTCTTTGTACTGAAGCAGCACTCCAGTGTATTAGGGAGAAAATGGATGTCATCGACTTGGAAGATGAATCAATAGATGCTGAGGTTTTGAATTCCATAGCTGTAACCAATGAACACTTCCAAACTGCTCTAGGGTCTTCTAATCCATCGGCCTTGCGGGAAACTGTTGTGGAGGTTCCAAACGTGTCATGGGATGATATTGGTGGGTTGGAAAATGTTAAAAGAGAGCTCCAGGAGACTGTCCAATACCCAGTGGAGCATCCTGAGAAGTTTGAAAAATTTGGCATGTCACCTTCTAAAGGTGTTCTCTTTTATGGTCCCCCTGGCTGTGGTAAAACGCTACTGGCTAAGGCAATTGCCAATGAATGCCAGGCCAACTTTATAAGTGTGAAAGGACCTGAGTTGCTGACGATGTGGTTTGGTGAAAGTGAGGCAAACGTGAGAGAGATATTTGACAAGGCTCGTCAGTCAGCTCCTTGTGTACTATTTTTTGATGAGCTCGATTCTATAGCAACTCAGCGTGGTAGCTCTGTTGGAGATGCTGGTGGTGCAGCAGACAGAGTCTTGAACCAACTTCTTACAGAAATGGATGGCATGACTGCAAAGAAGACTGTGTTCATAATTGGGGCAACAAACAGGCCAGACATTATCGACCCCGCGCTGCTGAGGCCGGGTCGTCTGGACCAATTAATATACATCCCACTCCCTGACGAGTCTTCTCGTCTTCAAATCTTTGAAGCGTGTCTGCGAAAGTCGCCAGTGGCGAAAGATGTCAATCTGTCAGCTCTTGCACGGTATACCCATGGCTTCAGTGGAGCTGATATCACCGAAATATGTCAGCGTGCCTGCAAGTATGCCATTAGAGAAAATATTGAGAAGGATCTTGAAAGGGAGAGAAAGCAGGGTGAAAACTCAGAAGCCATGGAAGAAGATGAGATTGACGATGTCTCAGAGATTAAAGCAGCACATTTTGAGGAGTCAATGAAGTTTGCTCGCCGAAGTGTGAGCGATGCAGACATCAGGAAGTACCAGCTCTTTGCTCAGACCCTACAGCAATCTCGTGGGATTGGTTCTGAGTTTCGGTTCCCTGATCGAAACGACAATGTGGCAGCGGGATCTGCTGACCCCTATGCTTCCACCATGGGTGCTGGAGATGATGATGACCTTTATGGCTGA 2460 44.63 MADPTASSASDKGQEPSSSSDEKNTKRDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQFFRGDTILLKGKKRRDTVCIVLADEQCEESKIRMNKIVRGNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAENVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEVLNSIAVTNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFEACLRKSPVAKDVNLSALARYTHGFSGADITEICQRACKYAIRENIEKDLERERKQGENSEAMEEDEIDDVSEIKAAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGIGSEFRFPDRNDNVAAGSADPYASTMGAGDDDDLYG 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26179489 26184772 + MELO3C026279.2.1 Cme02g01992 321881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01992 819 MobiDBLite consensus disorder prediction 785 819 - -
Cme02g01992 819 Gene3D - 19 124 - -
Cme02g01992 819 Gene3D - 125 221 - -
Cme02g01992 819 Gene3D - 667 775 - -
Cme02g01992 819 MobiDBLite consensus disorder prediction 1 33 - -
Cme02g01992 819 Coils Coil 716 736 - -
Cme02g01992 819 SUPERFAMILY ADC-like 38 122 IPR009010 -
Cme02g01992 819 SMART CDC48_2_2 142 208 IPR004201 -
Cme02g01992 819 PANTHER AAA-FAMILY ATPASE 17 793 - -
Cme02g01992 819 CDD AAA 496 663 - -
Cme02g01992 819 Gene3D - 388 479 - -
Cme02g01992 819 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 17 793 - -
Cme02g01992 819 MobiDBLite consensus disorder prediction 16 33 - -
Cme02g01992 819 CDD AAA 223 386 - -
Cme02g01992 819 ProSitePatterns AAA-protein family signature. 357 375 IPR003960 GO:0005524|GO:0016887
Cme02g01992 819 Pfam ATPase family associated with various cellular activities (AAA) 530 663 IPR003959 GO:0005524|GO:0016887
Cme02g01992 819 Pfam ATPase family associated with various cellular activities (AAA) 257 386 IPR003959 GO:0005524|GO:0016887
Cme02g01992 819 Pfam AAA+ lid domain 409 451 IPR041569 -
Cme02g01992 819 Pfam AAA+ lid domain 685 724 IPR041569 -
Cme02g01992 819 SMART CDC48_N_2 42 125 IPR003338 -
Cme02g01992 819 Pfam Cell division protein 48 (CDC48), domain 2 144 207 IPR004201 -
Cme02g01992 819 ProSitePatterns AAA-protein family signature. 633 651 IPR003960 GO:0005524|GO:0016887
Cme02g01992 819 Gene3D - 222 386 IPR027417 -
Cme02g01992 819 MobiDBLite consensus disorder prediction 1 15 - -
Cme02g01992 819 SUPERFAMILY Cdc48 domain 2-like 124 216 IPR029067 -
Cme02g01992 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 776 IPR027417 -
Cme02g01992 819 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 43 779 IPR005938 GO:0016787
Cme02g01992 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 478 IPR027417 -
Cme02g01992 819 SMART AAA_5 526 665 IPR003593 -
Cme02g01992 819 SMART AAA_5 253 389 IPR003593 -
Cme02g01992 819 Pfam Cell division protein 48 (CDC48), N-terminal domain 42 123 IPR003338 -
Cme02g01992 819 Gene3D - 480 663 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01992 K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase - csv:101205889 1587.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02354 Cme-Chr1:31900876 Cme02g01992 Cme-Chr2:26179489 2.17E-49 dispersed
Cme02g01992 Cme-Chr2:26179489 Cme08g01290 Cme-Chr8:9330978 0 dispersed
Cme06g01185 Cme-Chr6:9254303 Cme02g01992 Cme-Chr2:26179489 9.20E-42 dispersed
Cme08g00431 Cme-Chr8:2636149 Cme02g01992 Cme-Chr2:26179489 6.89E-35 dispersed
Cme12g00735 Cme-Chr12:13399112 Cme02g01992 Cme-Chr2:26179489 1.05E-42 dispersed
Cme02g01992 Cme-Chr2:26179489 Cme04g02520 Cme-Chr4:31499812 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g791 . . . . . . . . . . . Cma11g00084 . Car11g00077 . . Cpe04g01568 Bhi02g00487 . . . . . . Cla06g01678 Cam06g1866 . Cco06g1920 Clacu06g1821 Cmu06g1763 Cre06g2580 . . Cone13ag0155 . . . . . . . . . . . . . . . Cmo11g00085 . . . . . . . . . . . . . . . . . . . . Lsi06g01567 Csa01g00131 Chy02g02596 Cme02g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000638 2 4 4 4 4 3 5 3 3 3 3 2 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 2 3 99