Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01993 ATGTTAATGCCTGTAAATTCATGGACCCTCCCCTCATCTATCCTAATCCTTTGTTTTTCAGTCTCATATCTTTTCTTCCCTTTTGGAGTTTCCGCCATTAATGAACAGGGTCAAGCTCTACTCAATTGGAAGCTAAGTTTTAATGGATCAAACGAGGCTCTATATAATTGGAACCCCAACAATGAAAATCCATGTGGGTGGTTTGGAATCACTTGCAATAGAAATAGAGAAGTAGTGGAAGTAGTATTGAGATACGTGAACTTACCAGGAAAGCTTCCATTGAATTTCTCTCCATTGTCATCCTTGAACAGGCTTGTCTTGTCTGGAGTGAATCTCACTGGTTCAATTCCTAAAGAGATCAGTGCTCTTACCCAGTTGCGTACCTTGGAACTCAGTGACAATGGCTTAACGGGAGAAATTCCAAGTGAAATATGCAATTTGGTAGATCTTGAACAGCTTTACCTCAATTCAAATCTACTCGAAGGGTCGATACCTGCAGGTATCGGAAATCTCACAAATTTGAAGGAGCTGATTCTGTATGATAACCAGTTAAGTGGTGTAATTCCCATTAGCATAGGGAATTTGAAGCAGCTTGAAGTGATTAGAGCTGGAGGGAACAAGAACTTACATGGTTCTGTGCCGGAAGAAATTGGTAATTGCAGTAGTTTGGTGATTCTTGGTTTAGCTGAAACAAGCATCTCCGGCTTTCTTCCATCTAGTCTTGGCCGACTGAAGAAGCTTCAAACATTGGCAATCTATACTGCACTTCTCTCCGGCCAGATTCCTCATGAACTTGGTGACTGCATTGAGCTTCAAAACATCTATCTCTACGAGAATTCGCTCTCCGGTTCGATCCCAAGCACATTAGGAAGGCTACAGAATCTTCAGAGTGTGCTAATATGGCAGAACAGTTTGGTCGGTGTAATACCGCCGGAGCTCGGTAGGTGTGACCAATTGTTCGTCATCGACATTTCAATTAATTCTCTGACGGGAAGCATCCCTTCAACATTTGGTAATTTAACATTGCTCCAAGAATTGCAGCTGAGTACAAATCAATTATCCGGTGAGATTCCGAAGGAGATCGGAAATTGTCCGAGAATCACTCACATCGAGCTTGATAACAACCAGCTCACTGGTACGATTCCCTCTGAATTGGGAAATCTCACCAATCTTACATTGCTGTTCTTGTGGCAAAACAAGCTTGAGGGAAGTATTCCACCCACCATTTCGAATTGTCGCAATCTCGAGGCGTTGGATTTATCACTGAATGCCTTCACAGGTCCAATTCCGACGGGAATTTTCCAGTTGAAAAAACTTTCCAAGCTTCTGCTTCTTTCCAACAACCTCTCCGGTGTGATACCGCCGGCAATAGGTAACTGTTCGGCTCTGTTTCGGTTCAGAGCTAACAACAACAAGCTCACCGGAGAAATTCCGCCGCAGATTGGGAATTTGAAGAACTTGATTTTCCTAGACCTCGGAAACAATCACCTCACTGGAGCGTTGCCTCCGGAGATTTCCGGCTGTCGAAATTTGACATTCCTCGATATGCATTCCAACTCTCTCAAATTTCTTCCACAAGAATTCAACCAGCTTTCTTCCCTCCAGTACGTTGATCTCTCAAATAATCTAATCGAAGGGTCGCCGAATCCGAGTTTTGGATCTTCCAACTCGCTCACGAAACTCGTTCTCTCAAACAACCGCTTCTCTGGACCGATACCAACTGAAATCGGTACCTGCTTGAAACTGCAGTTACTGGATTTAAGTTGCAATCAGCTTTCCGGAAACATTCCTCCAAGCTTAGGCAAGATTCCTTCACTAGAAATTAGCCTCAATCTGAGCTTAAACCAACTAACCGGCGAGCTTCCGTCGGAGTTGGCAAATTTAGACAAGCTAGGGTCATTGGACCTCTCTTACAACCAACTCTCAGGTGACCTCCACATTCTCGCAGACATGCAGAATCTCGTAGTCCTCAATGTATCACACAACAATTTCTCAGGACGCGTACCAGAGACGCCATTCTTCACTCAACTCCCTCTGAGCGTCCTATCGGGTAACCCGGACTTGTGCTTCGCCGGCGAAAAATGCTACACCGACAACCACAGCGGCGGCGGTCACCACACACTAGCGGCTCGAGTGGCCATGGTGGTGTTACTGTGCACGGCATGCGCATTGCTATTAGCAGCAGTTTATATCATTCTCAAAGATAGACATTCATGTCGAAGATGCTTCAATGGGTCCCGCGGTGAAGATCCAGACACCGCCTTCGACAGCGACTTGGAGCTTGGTTCAGGTTGGGAAGTGACACTATACCAGAAGCTCGACCTGTCAATCTCCGACGTAATCAAGTGCTTAACGCCGGCAAACGTCATCGGCCGTGGCAAGACCGGCGTGGTGTACAGAGCATGCATCTCATCGGGATTAATAATCGCTGTGAAGCGATTCCGATCATCGGATAAGTTCTCGGCGGCGGCGTTTTCATCTGAAATCGCAACATTGGCAAGGATCCGGCATCGTAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAGTTGCTGTTCTACGACTACTTGCCGAATGGAAATTTGGGCGCGTTGCTACACGAAGGGAATGGGCGCGTGGGGCTAGACTGGGAAAGTAGATTCAAGATAGCGCTGGGCGTGGCGGAGGGATTGGCTTATTTGCACCACGACTGCGTGCCGGCGATATTGCACCGGGACGTGAAGGCTCACAATATTCTGTTGGGAGATCGCTACGAGGCCTGTTTGGCGGACTTTGGGCTCGCTCGATTGGTTGAAGATGGTCCAAGCGGTTCGTCTTCCGCGAACCCACAGTTCGCTGGCTCATACGGCTATTTTGCACCTGAATACGGGTGCATGCTGAGGATCACAGAAAAGAGCGATGTATATAGCTATGGTGTTGTTTTGCTAGAGATAATAACAGGCAAAAAGCCAGCGGATTCGTCATTTGCTGAGGGCCAACATGTAATACAGTGGGTAAGAGACCATTTAAAGAAAAAGAAGGATCCGGTTTTGATATTGGATCCAAAACTTCAAGGTCAACCTGACTCGCAAATACAAGAGATTCTACAAGTACTGGGGATCTCTTTACTTTGTACTAGCGACCGCTCTGAAGACCGACCAACGATGAAAGACGTGGCGGCTCTTTTAAGGGAGATCCAACAAGATCAAATGGGAACAGCAACAGAGGCTGCTGAAAAACCTCCACGAAAGAATAGCAATGCAACAAGTTTTGATACAACTACATCGTTTTCTTCTTCCTCTTCTATGGCTCCTGCAAGTCATTTGCTTTTCACATTGCCTCTTCAGGAATCATCGCGTTGCTCTTATGCTTCACTATCATCGTCGGGTGCATATATTCCACGCAAATAA 3399 46.37 MLMPVNSWTLPSSILILCFSVSYLFFPFGVSAINEQGQALLNWKLSFNGSNEALYNWNPNNENPCGWFGITCNRNREVVEVVLRYVNLPGKLPLNFSPLSSLNRLVLSGVNLTGSIPKEISALTQLRTLELSDNGLTGEIPSEICNLVDLEQLYLNSNLLEGSIPAGIGNLTNLKELILYDNQLSGVIPISIGNLKQLEVIRAGGNKNLHGSVPEEIGNCSSLVILGLAETSISGFLPSSLGRLKKLQTLAIYTALLSGQIPHELGDCIELQNIYLYENSLSGSIPSTLGRLQNLQSVLIWQNSLVGVIPPELGRCDQLFVIDISINSLTGSIPSTFGNLTLLQELQLSTNQLSGEIPKEIGNCPRITHIELDNNQLTGTIPSELGNLTNLTLLFLWQNKLEGSIPPTISNCRNLEALDLSLNAFTGPIPTGIFQLKKLSKLLLLSNNLSGVIPPAIGNCSALFRFRANNNKLTGEIPPQIGNLKNLIFLDLGNNHLTGALPPEISGCRNLTFLDMHSNSLKFLPQEFNQLSSLQYVDLSNNLIEGSPNPSFGSSNSLTKLVLSNNRFSGPIPTEIGTCLKLQLLDLSCNQLSGNIPPSLGKIPSLEISLNLSLNQLTGELPSELANLDKLGSLDLSYNQLSGDLHILADMQNLVVLNVSHNNFSGRVPETPFFTQLPLSVLSGNPDLCFAGEKCYTDNHSGGGHHTLAARVAMVVLLCTACALLLAAVYIILKDRHSCRRCFNGSRGEDPDTAFDSDLELGSGWEVTLYQKLDLSISDVIKCLTPANVIGRGKTGVVYRACISSGLIIAVKRFRSSDKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGNGRVGLDWESRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEACLADFGLARLVEDGPSGSSSANPQFAGSYGYFAPEYGCMLRITEKSDVYSYGVVLLEIITGKKPADSSFAEGQHVIQWVRDHLKKKKDPVLILDPKLQGQPDSQIQEILQVLGISLLCTSDRSEDRPTMKDVAALLREIQQDQMGTATEAAEKPPRKNSNATSFDTTTSFSSSSSMAPASHLLFTLPLQESSRCSYASLSSSGAYIPRK 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26187599 26192608 - MELO3C026278.2.1 Cme02g01993 321882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01993 1132 Gene3D Transferase(Phosphotransferase) domain 1 860 1086 - -
Cme02g01993 1132 Pfam Protein kinase domain 788 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01993 1132 SUPERFAMILY RNI-like 276 642 - -
Cme02g01993 1132 SUPERFAMILY Protein kinase-like (PK-like) 775 1059 IPR011009 -
Cme02g01993 1132 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1080 - -
Cme02g01993 1132 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Cme02g01993 1132 Gene3D Ribonuclease Inhibitor 332 427 IPR032675 -
Cme02g01993 1132 SUPERFAMILY L domain-like 59 311 - -
Cme02g01993 1132 Pfam Leucine rich repeat 319 377 IPR001611 GO:0005515
Cme02g01993 1132 Gene3D Phosphorylase Kinase; domain 1 768 859 - -
Cme02g01993 1132 Gene3D Ribonuclease Inhibitor 428 697 IPR032675 -
Cme02g01993 1132 SMART LRR_sd22_2 171 192 - -
Cme02g01993 1132 SMART LRR_sd22_2 123 149 - -
Cme02g01993 1132 SMART LRR_sd22_2 628 653 - -
Cme02g01993 1132 SMART LRR_sd22_2 388 417 - -
Cme02g01993 1132 ProSiteProfiles Protein kinase domain profile. 784 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01993 1132 Gene3D Ribonuclease Inhibitor 206 331 IPR032675 -
Cme02g01993 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672|GO:0006468
Cme02g01993 1132 Gene3D Ribonuclease Inhibitor 32 205 IPR032675 -
Cme02g01993 1132 PANTHER OS01G0170300 PROTEIN 4 1080 - -
Cme02g01993 1132 ProSitePatterns Protein kinases ATP-binding region signature. 790 812 IPR017441 GO:0005524
Cme02g01993 1132 SMART LRR_typ_2 340 364 IPR003591 -
Cme02g01993 1132 SMART LRR_typ_2 123 147 IPR003591 -
Cme02g01993 1132 SMART LRR_typ_2 436 460 IPR003591 -
Cme02g01993 1132 SMART LRR_typ_2 531 554 IPR003591 -
Cme02g01993 1132 SMART LRR_typ_2 388 412 IPR003591 -
Cme02g01993 1132 SMART LRR_typ_2 484 508 IPR003591 -
Cme02g01993 1132 SMART LRR_typ_2 509 530 IPR003591 -
Cme02g01993 1132 SMART LRR_typ_2 292 316 IPR003591 -
Cme02g01993 1132 SMART LRR_typ_2 651 684 IPR003591 -
Cme02g01993 1132 SMART LRR_typ_2 171 195 IPR003591 -
Cme02g01993 1132 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515
Cme02g01993 1132 SMART serkin_6 784 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01993 1132 MobiDBLite consensus disorder prediction 1068 1099 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01993 Cme12g01675 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01993 Cme-Chr2:26187599 Cme05g00661 Cme-Chr5:7251601 0 dispersed
Cme01g01080 Cme-Chr1:13500665 Cme02g01993 Cme-Chr2:26187599 0 transposed
Cme07g01197 Cme-Chr7:16317453 Cme02g01993 Cme-Chr2:26187599 8.67E-139 transposed
Cme12g01675 Cme-Chr12:23718919 Cme02g01993 Cme-Chr2:26187599 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64711 PF00069 Pkinase 4.50E-39 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01993 - - csv:101206847 2116.27