Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g02002 ATGGCATCATCAAGTTCCTACAACTCTCCATGTGCAGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCATAAAATCTTTGGGGCTAGCAATGTAACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGGGAGGATGCAGTGAACTCTCTAGCCTACGAGGCTGAGGCCCGAGTTCGGGACCCAGTTTACGGTTGCGTTGGAGCAATCTCCTTCCTCCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTCGACGCTGCGAATGCCGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGCCATCAAGTGGTTCAGCCCAGCCTCGGCAGCACTCGCCCAAGGGCGGCGTTAGATCAATATCACACAAGTTCAACAAGTGGATATTATAATCATCTTCCTGCTTTTCCCATGGCTTATCCATTGTCTTGGAATGAAAACGCTTCTGGAAATAACATCAATGAAGGAGGAAGAGATGGCAATATTTGA 558 46.95 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSHQVVQPSLGSTRPRAALDQYHTSSTSGYYNHLPAFPMAYPLSWNENASGNNINEGGRDGNI 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26262460 26263017 - MELO3C026269.2.1 Cme02g02002 321891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g02002 185 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Cme02g02002 185 Coils Coil 89 116 - -
Cme02g02002 185 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cme02g02002 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 184 - -
Cme02g02002 185 PANTHER ELONGATED PETIOLULE 1 1 184 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g02002 Cme12g01670 CCT
Cme02g02002 Cme12g01670 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02002 Cme-Chr2:26262460 Cme04g01850 Cme-Chr4:26268072 1.14E-72 dispersed
Cme11g02517 Cme-Chr11:31682796 Cme02g02002 Cme-Chr2:26262460 9.65E-37 dispersed
Cme01g02841 Cme-Chr1:35324126 Cme02g02002 Cme-Chr2:26262460 1.60E-28 transposed
Cme05g01206 Cme-Chr5:19496762 Cme02g02002 Cme-Chr2:26262460 1.22E-60 transposed
Cme08g00105 Cme-Chr8:768543 Cme02g02002 Cme-Chr2:26262460 4.26E-42 transposed
Cme09g00298 Cme-Chr9:2440909 Cme02g02002 Cme-Chr2:26262460 7.66E-30 transposed
Cme03g01034 Cme-Chr3:19570987 Cme02g02002 Cme-Chr2:26262460 1.62E-42 transposed
Cme12g01670 Cme-Chr12:23697413 Cme02g02002 Cme-Chr2:26262460 4.19E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40953 PF03195 LOB 2.80E-42 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g02002 - - csv:101205890 361.303