Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g02022 ATGGAAGCTCTGGCGCTTCCTTCCCTGAATTCACTCACCATTTCTTGCTCTAATTTGAAGAAAGGGAGTTTTTCCAACTTCCCCAGAAGCTTAAATCACTCTAAATTTTACGAACAATCCACCTTAAAGTTCAGCCCCCTTCATGGTACCCACCGCCATCATTTCAATGTTGTCAAAATGCAAAGTGATAGCGAAGACTATGAGCTGAAGCAAATGAGGGATATGGCTGCAGCTAAAAAGAGATGGGATTCTCTGATCCGAGAAGGCAAAGTGAAAGTTTTGATGCCAAGGGAAGCTGGTTATGCTGTTCAGCTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTATAGAACACAAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCTATCTTTGAGGTTGATGACAAACTTGATCCTGGAACTCTTTCTCGAAAAGTCACAAGCTTCATGATGGGGGGATGGTGGAGTGGTGTGCCTACCGTATCCTACAATAGCCGATTCTTATCAGAAGTTCAAGAGAAGTTTCCAAAAGACGCTGACCTTATTCTTGCATGCCAAAAGGGGTTGAGGTCCCTGGCTGCATGTGAAATCCTCTACAATGCTGGTTATAGAAACCTTTTCTGGGTTCAAGGCGGTCTAGATGCTGCGGAAGAAGAGGATCTTGTCAGAGAAGGTCCTCAACCTTTGAAATTCGCTGGGATTGGTGGGCTTTCAGAATTCCTTGGTTGGACAGATCAACAAAGGATAGCTGGTGCAAAAGAAGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTTTGATTGCAGTCTTCATCTTTGCGGATGCCTTGTTTATTGGCGTCCAACAATTGGGTCGCTATGTTCAGGAATTACGGTCTCACTGA 888 44.71 MEALALPSLNSLTISCSNLKKGSFSNFPRSLNHSKFYEQSTLKFSPLHGTHRHHFNVVKMQSDSEDYELKQMRDMAAAKKRWDSLIREGKVKVLMPREAGYAVQLSDKTLLDVRPSIEHKKAWVKGSTWIPIFEVDDKLDPGTLSRKVTSFMMGGWWSGVPTVSYNSRFLSEVQEKFPKDADLILACQKGLRSLAACEILYNAGYRNLFWVQGGLDAAEEEDLVREGPQPLKFAGIGGLSEFLGWTDQQRIAGAKEGWGYRLVYSARLIAVFIFADALFIGVQQLGRYVQELRSH 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26371066 26374713 - MELO3C026250.2.1 Cme02g02022 321911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g02022 295 Pfam Rhodanese-like domain 103 217 IPR001763 -
Cme02g02022 295 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 98 218 IPR036873 -
Cme02g02022 295 SMART rhod_4 94 224 IPR001763 -
Cme02g02022 295 CDD RHOD 109 217 - -
Cme02g02022 295 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 294 IPR044664 -
Cme02g02022 295 ProSiteProfiles Rhodanese domain profile. 104 227 IPR001763 -
Cme02g02022 295 Gene3D - 91 258 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g02022 - - - csv:101221836 580.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02022 Cme-Chr2:26371066 Cme08g01733 Cme-Chr8:19839535 1.49E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g01293 . 59 322 Sulfurtransferasese/Rhodanese AT1G79230 76.5 1.5e-120 429.5
Cme06g01293 . 59 324 Sulfurtransferasese/Rhodanese AT1G16460 74.4 2.1e-115 412.1
Cme12g01908 . 36 324 Sulfurtransferasese/Rhodanese AT5G23060 61.1 3.6e-82 302.0
Cme06g00108 . 1 442 Sulfurtransferasese/Rhodanese AT4G01050 53.0 4.0e-115 412.1
Cme12g00775 . 5 601 Sulfurtransferasese/Rhodanese AT1G09280 64.3 2.1e-224 775.4
Cme10g01270 . 3 329 Sulfurtransferasese/Rhodanese AT2G40760 61.6 7.6e-116 414.5
Cme04g02001 . 84 428 Sulfurtransferasese/Rhodanese AT1G17850 65.0 4.9e-141 498.0
Cme08g01733 . 41 218 Sulfurtransferasese/Rhodanese AT2G42220 69.1 7.1e-67 250.8
Cme02g02022 . 1 295 Sulfurtransferasese/Rhodanese AT4G24750 67.0 9.1e-112 400.2
Cme05g00202 . 67 259 Sulfurtransferasese/Rhodanese AT5G19370 61.1 1.8e-67 253.1
Cme06g02850 . 113 467 Sulfurtransferasese/Rhodanese AT5G55130 71.0 2.2e-147 518.8
Cme06g01169 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.0 2.3e-78 288.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31