Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g02023 ATGTGGCACATGACTTGCTCAACAAAATATGGGTTTAGTTTTGTAGATACAACCTTTTTAATTTTCCCTCAAAATTCGGGTTTTGATGATTTTGGAAATAATTTTAGAGTGAAACGAAAGGATAGAGCCAAAGAAGAAGGTGTCAGAATCGGCGAAAAAATGGCAATCAAAATTATTTTGGCTGCGCAGGAATCTTCCTGGAAATTAACCATCGCCAAGCTTGAACCAAACAGGAGTCTGAATTTGCCTGTGTTTTGTACAAAGATACGAAGCTCTCGTAGAAGATTTGGGAGTTCTTGTGAAGTGATGGGTGGGAAAAGTTCTAAGCATGGAAGTTCAAGACGGAATTCGTCTAGTCGGTCGAACTCACAGCAGTGGGGTCATTATGGTTATCCGGAGTCGCCATATACTCAATCGAGAAGCACACCTCGGTATGCACCTCCAACTCCTAGCTATGGTGGAACTCAAGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTACTCAAGGATAGATGATAACTATAATAGTCTAGATCAGGTTACTGAGGCATTAGCTCGTGCTGGCCTGGAGTCCTCGAATCTTATCGTTGGTATAGATTTCACAAAGAGCAATGAGTGGACAGCATGTGCACATGCTAACTGTGCCCTTTGTATAGGTGCAAGATCATTCAACCGTAGAAGTTTGCATCATATTGGAGATGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGGCAAACATTATCTTCCTTTGATGAAGATAATATGATTCCTTGCTTCGGTTTTGGAGATGCATCCACTCATGACCAAGAGGTTTTCAGCTTTTATTCCGACGAGCGATTTTGTAATGGATTTGAAGAAGTGTTGGGTAGATACAAGGAACTGGTGCCGCATCTTCGACTTGCAGGTTGCAGTCTGCCTGTTTGCTATGTCATATTTCTCTGTCGTTGTTATTTTGTACTTAGTATACTTTCATTATTCATCCCTGGGACAGGACCGACATCTTTTGCACCTATCATCGAAATGGCTATCACAATTGTCGAGCAAAGCGGCGGCCAATACCATGTATTGGTAATAATAGCTGATGGTCAGCAATACACTCAGCAAGCTGACTACTCTCTTCAGGTCACAAGAAGTGTTGATACTGAGCGTGGACAGTTTAGCCCACAGGAAAAGAAAACCATTGAAGCAATAGTGAAAGCTAGCAAATATCCCCTGTCGATTATACTAGTTGGAGTTGGAGATGGGCCTTGGGACATGATGAGGGAATTTGACGACAATATCCCAGCTCGAGCCTTCGATAACTTCCAATATATATGCAATCTGAGATTTGCACTTTTGATTCGACAGTTCGTGAATTTCACAAACATAATGTTAAAGAATATAGATCGATCCAGAAAGGAAGCGGAATTTGCTCTTGCAGCACTCATGGAAATACCCTCACAGTACAAAGCAACACTGGAGCTTGGTCTTTTGGGTGTCAGTAGAGGGAAGGCAATCGACCGGATTCCTCTTCCTCCTCCTTTTTATGGACCTAGTATCCAAAAAACCTCAAACTCAAGCAGTTCTCGCCCAACGCCACCCTCATTTAGTGGAGTTGCTCCTGTCCGAACCGCACCTCCTCTAAGTTCAGTTTCCGATGCCCATGCTTGTCCCATCTGCATCTCCAATGCTAAGGATATGGCTTTTGGCTGTGGACATCAGACATGTTGTGAATGTGGACAGGATCTTCAGCTATGTCCCATATGCCGCAGCTTTATCGACACAAGGATAAAGCTTTATTAG 1791 43.05 MWHMTCSTKYGFSFVDTTFLIFPQNSGFDDFGNNFRVKRKDRAKEEGVRIGEKMAIKIILAAQESSWKLTIAKLEPNRSLNLPVFCTKIRSSRRRFGSSCEVMGGKSSKHGSSRRNSSSRSNSQQWGHYGYPESPYTQSRSTPRYAPPTPSYGGTQAPETRKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTACAHANCALCIGARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYSDERFCNGFEEVLGRYKELVPHLRLAGCSLPVCYVIFLCRCYFVLSILSLFIPGTGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQQYTQQADYSLQVTRSVDTERGQFSPQEKKTIEAIVKASKYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQYICNLRFALLIRQFVNFTNIMLKNIDRSRKEAEFALAALMEIPSQYKATLELGLLGVSRGKAIDRIPLPPPFYGPSIQKTSNSSSSRPTPPSFSGVAPVRTAPPLSSVSDAHACPICISNAKDMAFGCGHQTCCECGQDLQLCPICRSFIDTRIKLY 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26377726 26381079 + MELO3C026249.2.1 Cme02g02023 321912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g02023 596 MobiDBLite consensus disorder prediction 105 156 - -
Cme02g02023 596 Pfam Zinc finger, C3HC4 type (RING finger) 551 590 - -
Cme02g02023 596 SUPERFAMILY RING/U-box 545 591 - -
Cme02g02023 596 CDD RING-HC_RGLG_plant 553 596 IPR045317 GO:0061630|GO:0070534
Cme02g02023 596 PANTHER COPINE FAMILY PROTEIN 1 333 596 - -
Cme02g02023 596 MobiDBLite consensus disorder prediction 516 531 - -
Cme02g02023 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 538 596 IPR013083 -
Cme02g02023 596 PANTHER RING-FINGER PROTEIN 103 306 - -
Cme02g02023 596 ProSiteProfiles Zinc finger RING-type profile. 553 586 IPR001841 -
Cme02g02023 596 MobiDBLite consensus disorder prediction 97 161 - -
Cme02g02023 596 Pfam Copine 333 494 IPR010734 -
Cme02g02023 596 Pfam Copine 228 306 IPR010734 -
Cme02g02023 596 SUPERFAMILY vWA-like 194 427 IPR036465 -
Cme02g02023 596 PANTHER COPINE FAMILY PROTEIN 1 103 306 - -
Cme02g02023 596 PANTHER RING-FINGER PROTEIN 333 596 - -
Cme02g02023 596 MobiDBLite consensus disorder prediction 516 535 - -
Cme02g02023 596 Coils Coil 161 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g02023 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101221610 781.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02023 Cme-Chr2:26377726 Cme10g00600 Cme-Chr10:3825102 0 dispersed
Cme02g02023 Cme-Chr2:26377726 Cme09g00441 Cme-Chr9:4220702 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136