Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g02026 ATGGCTTCTACTTCAGCCACTTCCCTTTTCAAGCCTTTATCCAAGCCGGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACTGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTCCATCTTTCCTCGTCGTCTTCCCATTCTTCATGCTTTTACCCTTCAAAGAAGAAACCCCATCTTCCCTCTGTGGCTCAAACTTCCGACTGGGCTCAAGAAGATGACACTATGACCATTGACCCAAAACTCGACAACGACGAAGATGCGGAAGAAGAAGGCGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGCGAAGATGGAGGAAGTGAGGCTGAAGTAGGAGGAGATGAAGAAGAAGAAGAAGAAGGGGAACAAGGGCCTTATGAAGAGCCAAACGAAGATGCTAAACTGTTTGTTGGGAATTTGCCTTATGATATTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACTGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATAGGAGTCGCGGTTTTGGGTTTGTGACAATGAGTACAGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGTTATCAGGGAGGCTATTGACTGTTAATAAGGCTGCTCCAAGAGGTACAAGGCAAGAACGCCAACCTCGACCATTCCAACCTGCTTTCAGAATCTATGTGGGCAATCTTCCATGGGATGTAGACAATGCACGCTTGGAGCAGGTCTTTAGTGAACATGGTAAAGTAGTAGATGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGAAGGAAGGGCAATCAGAGTAAATGTTGCTGAGGAAAGACCAAGGCGCAACTTCTGA 993 46.32 MASTSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPSKKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGEGEDGGSEAEVGGDEEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQPRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26390976 26393565 + MELO3C026246.2.1 Cme02g02026 321915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g02026 330 MobiDBLite consensus disorder prediction 101 120 - -
Cme02g02026 330 SUPERFAMILY RNA-binding domain, RBD 147 241 IPR035979 GO:0003676
Cme02g02026 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 223 IPR000504 GO:0003723
Cme02g02026 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 248 318 IPR000504 GO:0003723
Cme02g02026 330 MobiDBLite consensus disorder prediction 121 145 - -
Cme02g02026 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 324 IPR000504 GO:0003723
Cme02g02026 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 230 IPR000504 GO:0003723
Cme02g02026 330 PANTHER OS02G0815200 PROTEIN 1 329 - -
Cme02g02026 330 SMART rrm1_1 153 226 IPR000504 GO:0003723
Cme02g02026 330 SMART rrm1_1 247 320 IPR000504 GO:0003723
Cme02g02026 330 CDD RRM_HP0827_like 153 230 - -
Cme02g02026 330 PANTHER RIBONUCLEOPROTEIN 1 329 - -
Cme02g02026 330 SUPERFAMILY RNA-binding domain, RBD 239 328 IPR035979 GO:0003676
Cme02g02026 330 Gene3D - 80 235 IPR012677 -
Cme02g02026 330 Gene3D - 236 329 IPR012677 -
Cme02g02026 330 MobiDBLite consensus disorder prediction 61 151 - -
Cme02g02026 330 CDD RRM_HP0827_like 247 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g02026 - - - csv:101221130 583.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02026 Cme-Chr2:26390976 Cme04g02526 Cme-Chr4:31538461 6.75E-16 dispersed
Cme06g02459 Cme-Chr6:31608798 Cme02g02026 Cme-Chr2:26390976 4.83E-08 dispersed
Cme10g00098 Cme-Chr10:696135 Cme02g02026 Cme-Chr2:26390976 6.77E-06 dispersed
Cme10g00870 Cme-Chr10:6066786 Cme02g02026 Cme-Chr2:26390976 8.81E-15 dispersed
Cme11g00845 Cme-Chr11:11085551 Cme02g02026 Cme-Chr2:26390976 1.54E-07 dispersed
Cme12g01944 Cme-Chr12:25371130 Cme02g02026 Cme-Chr2:26390976 6.67E-12 dispersed
Cme02g02026 Cme-Chr2:26390976 Cme06g00447 Cme-Chr6:2850612 5.49E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35