Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g02029 ATGCCTTCACCTACCTCCAAACTCCTTCCCTTCTTGACTTTTCTCTCCGTCGTTCTCCATGTCCACGCCGGTCTGAATCTTGATCCTTCAGATCTCAGAGCCTTTTCTATCATAAAAAACGACTTGGGCATTGACGGTCAACTCTCCTCTTTCCCATGCCACAACGCCGGAGTGTTCTGCGAGCGGCGGCTCTCCAACAACGGCACTTATGTTTTGAGGATCACCAGGCTTATTTTCAACTCCAAAGATCTCTCCGGTTCTCTTTCTCCGGCTATCGGCAGGCTCACGGAGTTGAAAGAGCTTACGGTTTCTAATAATCACCTCGTTGACCAAGTACCTTCCCAAATCGTTGACTGCCGGAAACTGGAAATTCTCGATCTCCAAAACAACCAATTTTCTGGAAAAGTTCCTTCGGAATTATCCTCGTTGATTCGTCTTCGAGTCATTGATCTTTCGTCCAATAAATTCTCCGGGAGTTTGGATTTCTTGAAGTATTTCCCCAACTTGGAAAGTCTTTCTATTGCCAATAATTACTTTACAGGGAAGATTCCAGCTTCAATTCGTTCTTTTCGTAACCTTCGAGTCTTCAACTTCTCTGGAAATCGCCTTCTCGAAAGCTCAAGCTCTATAGTGAAGGATGTTGAGTTCTACTCGGCTACTGAAGTTCCCAAGCGTTATGTGTTAGCTGAAAATTCCAGAACGAACGGCACGCAAAGAGCCACCGCCCCCGCCACAGCGCCGACTTCGAGCGCTCAAGCTCCAAACGCCTCCCCCGTCCATAAGAATCGGAAAAATAAAGCAAAAAAGATAGCTTCTTGGATACTTGGGTTCATCGCTGGAGCAATTGCTGGAAGTTTGTCAGGGTTTATCTTTTCTCTACTGTTTAAACTTGTAATAGCAGCTATAAAAGGAGGAAGCAAGAATTCCGGTCCATCAATCTTTGCTCCTAAATTGATAAAACGAGATGATTTGGCTTTTCTAGAGAGAGACGATGCGCTTGCATCGCTGCAGCTGATTGGAAAAGGTGGATGTGGAGAAGTTTACAAGGCTGAATTACCGGAAAAAAGTGGGAAAATGTTTGCGATAAAGAAGATTACTCAACCTCCAAAGGATGCAGCGGAGTTAGCCGAAGAGGAAAGCAGGCATATGAGCAAGAAAATGCGTCAAATCAAATCGGAGATCAGGACCGTGGGTGAAATCCGGCACCGGAATCTTCTTCCTCTTGTGGCACATGTCCCTCGTCCTGATTGCCATTACCTTGTGTATGAATTGATGAAGAACGGTAGCTTGCAAGATATGTTGAATCAGGTTTCGGCAGGAGTGAAAGAACTAGATTGGCTTACTCGGCATAACATTGCCCTCGGAGTGGCATCTGGGTTGGAGTATCTTCACATGAACCATACCCCACGTATTATTCACAGAGATCTAAAGCCTGCAAATGTTTTGCTTGATGATGACATGGAAGCTCGAATTGCCGATTTTGGGCTGGCGAAAGCAATGCCAGATGCCCAAACTCACATGACAGCTTCAAATGTTGCTGGTACCGTAGGATACATCGCACCGGAGTATCACCAGACATTGAAGTTCACAGATAAATGTGACATATACGGCTTTGGGGTTCTGTTAGGTGTCTTGGTGATTGGGAAACTTCCATCTGATGAATTTTTCCAGAACACGGATGAGATGAGTTTGGTTAAGTGGATGAAGAATGTTATGACTTCTGATAATCCTAGAGGAGCCATTGATCCGAAGCTCCTGGGGAATGGCTGGGAGGAGCAAATGCTTTTGGCCCTGAAAATTGCCTGCTTCTGCACTATGGATAATCCAAAAGAGAGGCCTAACAGTAAGGAGGTTAGATGCATGCTGTCACAGATCAAGCACGATGTACCTGAAACTCCCTCTGAATGTGTCTAA 1914 45.35 MPSPTSKLLPFLTFLSVVLHVHAGLNLDPSDLRAFSIIKNDLGIDGQLSSFPCHNAGVFCERRLSNNGTYVLRITRLIFNSKDLSGSLSPAIGRLTELKELTVSNNHLVDQVPSQIVDCRKLEILDLQNNQFSGKVPSELSSLIRLRVIDLSSNKFSGSLDFLKYFPNLESLSIANNYFTGKIPASIRSFRNLRVFNFSGNRLLESSSSIVKDVEFYSATEVPKRYVLAENSRTNGTQRATAPATAPTSSAQAPNASPVHKNRKNKAKKIASWILGFIAGAIAGSLSGFIFSLLFKLVIAAIKGGSKNSGPSIFAPKLIKRDDLAFLERDDALASLQLIGKGGCGEVYKAELPEKSGKMFAIKKITQPPKDAAELAEEESRHMSKKMRQIKSEIRTVGEIRHRNLLPLVAHVPRPDCHYLVYELMKNGSLQDMLNQVSAGVKELDWLTRHNIALGVASGLEYLHMNHTPRIIHRDLKPANVLLDDDMEARIADFGLAKAMPDAQTHMTASNVAGTVGYIAPEYHQTLKFTDKCDIYGFGVLLGVLVIGKLPSDEFFQNTDEMSLVKWMKNVMTSDNPRGAIDPKLLGNGWEEQMLLALKIACFCTMDNPKERPNSKEVRCMLSQIKHDVPETPSECV 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26403848 26406018 + MELO3C026243.2.1 Cme02g02029 321918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g02029 637 MobiDBLite consensus disorder prediction 233 263 - -
Cme02g02029 637 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515
Cme02g02029 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Cme02g02029 637 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 7 627 - -
Cme02g02029 637 ProSiteProfiles Protein kinase domain profile. 333 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g02029 637 SUPERFAMILY Protein kinase-like (PK-like) 333 626 IPR011009 -
Cme02g02029 637 Pfam Protein kinase domain 336 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g02029 637 MobiDBLite consensus disorder prediction 233 259 - -
Cme02g02029 637 Gene3D Transferase(Phosphotransferase) domain 1 425 634 - -
Cme02g02029 637 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515
Cme02g02029 637 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 627 - -
Cme02g02029 637 Gene3D Phosphorylase Kinase; domain 1 326 424 - -
Cme02g02029 637 SUPERFAMILY L domain-like 52 206 - -
Cme02g02029 637 SMART serkin_6 333 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g02029 637 Coils Coil 373 393 - -
Cme02g02029 637 Gene3D Ribonuclease Inhibitor 141 219 IPR032675 -
Cme02g02029 637 Gene3D Ribonuclease Inhibitor 38 140 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02029 Cme-Chr2:26403848 Cme04g00945 Cme-Chr4:12717183 2.56E-07 dispersed
Cme11g02366 Cme-Chr11:30645231 Cme02g02029 Cme-Chr2:26403848 4.41E-53 dispersed
Cme02g02029 Cme-Chr2:26403848 Cme05g00654 Cme-Chr5:7055603 7.10E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64714 PF00069 Pkinase 2.80E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g02029 - - csv:101220500 1201.04