Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g02063 ATGGCACCGCATGACATTCGCCGTCCACACAAACGCCCCGCGATCTCTGATCAGCAGAAGCGGCGGGAACTTTCTTTGCAACGGCAACAGCAGAATCGCCGCGATGCTCAGCAACAAGCTCGTTCCTTAGCCTCCACGCTTCTCTCCCTCTCATCCTCGTTCAACGAGCCTAGTACCTCCGAGCCGGTGCTGGAAATTGAACTAAACGAACTCGAATCAGAAACGGAATGTTCGACGGAGATCTTAGCGGAACGTGAGTTTAATGAGCCTGCTCTGAAGGAACTCGATGTTCGACAGGCATCGAAGCTCAAAAGTTCAGATGCTCGTAAGTGGTTTTCGAAGCAACTGCTACTTCCTGAGTGGATGATAGACGTTCCCGATCGACTTACCGATGACTGGTACGTGTTTGCAAGGCCTTCCGGTAAACGGTGCTTTGTAGTTTCATCCAATGGAACAACGATCAGTAGGCTACGAAATGGATCGATTCTGCATCGTTTTCCTTCTGCTCTACCTAACGGAGCAAAGACAAAGAATGCCTCTGGTTCCGGTCAAACATATTCTATTCTAGATTGTATATTTCATGAAGTAAATCAAACGTACTACGTCATTGATATGATTTGTTGGCGAGGATATTCTCTTTATGATTGCGCAGCCGAGTTTCGGTTCTTCTGGCTCAATTCCAAGCTCGCTGAAAGTGGAGCTTGTGAACCGCCTTCATACTATCACAAGTATAAATTCAGTTTGGTACCTGTATACTCATGCGATCAAAATGGTCTCCATGCAGCTTATGCAGGAGAAGCACCTTTTGTCAAGGATGGTCTATTATTTTACAACAAGCACTCCCATTACCAGCCAGGAAATACACCGCTTGCTTTGGTCTGGAAGGATGAGAATTGCAGTCAATATGTTATTGACACAGATAGTAATGGACAAGTTCCAAGCCAACAGCAGCTGGTTTTGGAGCTACAAAGTGATGGGAAGGTGGCTACATCAGATGATCCTCCTGTGTACTTTGGATGCTTAGATGGTGACTTTCTCGGAAAGTTAGGTTTGTCTTCAGGCAATTTATTGCGATTCACCATTGGTGATGGAGGGTTAACAATTGTGGACGGGAAGATTCAGGGGGCTGATTTACAATACAATGGCAAGGTCAATCGAGCTCGAGCCTTTGCAGATAGTTACTCCAAGGTAATGTTTCAATATGCAGCTCGTCGCTCACCTTTAAAAATAGATGATCTATTAGCATCCATCAATTCATCGAATGATGGAGGAGGTCATGATACTGAAATGGTTGGATAG 1299 45.42 MAPHDIRRPHKRPAISDQQKRRELSLQRQQQNRRDAQQQARSLASTLLSLSSSFNEPSTSEPVLEIELNELESETECSTEILAEREFNEPALKELDVRQASKLKSSDARKWFSKQLLLPEWMIDVPDRLTDDWYVFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKNASGSGQTYSILDCIFHEVNQTYYVIDMICWRGYSLYDCAAEFRFFWLNSKLAESGACEPPSYYHKYKFSLVPVYSCDQNGLHAAYAGEAPFVKDGLLFYNKHSHYQPGNTPLALVWKDENCSQYVIDTDSNGQVPSQQQLVLELQSDGKVATSDDPPVYFGCLDGDFLGKLGLSSGNLLRFTIGDGGLTIVDGKIQGADLQYNGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGGGHDTEMVG 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26604917 26609605 + MELO3C026209.2.1 Cme02g02063 321952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g02063 432 Gene3D DNA ligase/mRNA capping enzyme 3 319 - -
Cme02g02063 432 PANTHER SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1 1 425 IPR017336 GO:0005634|GO:0005737|GO:0061015
Cme02g02063 432 MobiDBLite consensus disorder prediction 1 42 - -
Cme02g02063 432 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 111 295 - -
Cme02g02063 432 CDD Snurportin-1_C 111 297 - -
Cme02g02063 432 Coils Coil 26 46 - -
Cme02g02063 432 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g02063 K13151 SNUPN, RNUT1; snurportin-1 - csv:101214543 798.505
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g111 . . . . . . . . . . . Cma11g00034 . Car11g00031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00058 Cmo11g00036 . . . . . . . . . . . . . . . . . . . . . . . Cme02g02063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011602 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30