Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g02067 ATGTCATCAATGGCGGCGGCTACTTCACCATGCGCCTCCAAATCCTTCTCCAAATCTTCCTCCTTCAACCTTACCAAACCCTTCTCAAGATTCGATCTTTCATTTTCCTCTCTTCCTCACAACCCCACCTTCCGCCGCCCTCTTCGCATCTGCTCAACCTCTCTCTCCAATCCTTCTCCTAAACCCTCTTCCACCGCCGCCTCCGCCGCTGCCGTCGAAACTTCCTCCATCGCCAGTTCTGATATTTTCGTCTCCCGATTCGCTGCTGATGAACCGAGAAAAGGCGCCGATATCCTCGTTGAAGCCCTCGAGCGCCAAGGCGTCACTAATGTCTTCGCTTACCCCGGCGGCGCGTCAATGGAGATCCATCAGGCCCTCACCCGCTCTTCAATTATCCGTAACGTTCTCCCCCGCCACGAGCAGGGTGGGGTATTTGCTGCCGAGGGTTACGCTCGCTCCTCTGGCCTCCCCGGCGTTTGCATTGCAACTTCCGGTCCCGGTGCTACTAATCTGGTCAGCGGCCTTGCAGATGCTCTTCTCGATAGCGTTCCATTGGTGGCCATTACAGGGCAAGTTCCTAGGAGAATGATTGGTACAGATGCTTTTCAGGAAACTCCAATTGTTGAGGTAACTCGCTCTATTACAAAGCACAATTATCTGGTTCTTGATGTAGATGACATTCCTAGGATTGTGAGCGAGGCATTTTTCCTCGCGATTTCTGGTCGACCTGGTCCTGTTCTTATTGATATTCCTAAGGACGTTCAGCAACAGCTCGCGGTTCCCAATTGGAATCAACCCATGAAATTACCCGGTTACTTGTCTAGGTTACCTAAACCTCCCATTGACTCCCATTTGGAGCAAATTTTGCGACTGATCTCTGAATCTAAGAAGCCTGTTCTTTATGTGGGTGGAGGGTGTTTGAATTCCTCGGAGGAGCTGCGGAGGTTTGTCAAGTTCACCGGGATTCCGGTGGCCAGTACTCTGATGGGTCTTGGGGCTTATCCTTGCGCCGATGATTTGTCTCTGCAAATGCTGGGCATGCATGGGACAGTTTATGCAAACTATGCTGTAGATAAATCTGACCTGTTGCTTGCATTTGGAGTGAGATTTGATGACCGTGTGACAGGGAAGCTTGAGGCTTTTGCGAGCCGTGCAAAAATCGTTCATATCGATATCGATTCAGCTGAGATTGGGAAAAACAAGCAGCCCCATGTTTCGGTCTGTGGCGATGTGAAGTTGGCCCTACAGGGAATGAATCGTTTACTTGAGAAAGCTCAGATGCTTCACTTTGATTTCTCTGCTTGGAGAGAGGAGCTGAATGAGCAGAAATCAAAGTATCCATTGACTTTCAAAACATTTGATGAGGCCATTCCTCCACAATATGCAATTCAACTCCTTGATGAGCTAACCAACGGCGAGGCGATCATAAGCACAGGGGTGGGGCAGCATCAGATGTGGGCAGCTCAGTTCTACAAGTACAAGAAGCCACGCCAGTGGTTAACCTCCGGTGGATTAGGTGCAATGGGTTTTGGACTGCCAGCGGCCATGGGGGCAGTAGTAGCAAATCCTGGTGCAGTGGTTGTAGACATCGACGGGGACGGGAGTTTCATCATGAATGTCCAAGAACTAGCAACAATCAGCGTCGAGAAACTTCCAGTGAAGATCCTGCTCCTGAACAACCAGCATCTGGGCATGGTTGTGCAGTGGGAGGATCGGTTCTACAAAGCCAACAGAGCTCACACTTACCTGGGAAATCCATCGAACGAATCTGAGATATTCCCCAACATGTTGAAGTTTGCAGAGGCGTGTGGGATCCCTGCTGCACGCGTGACAAAGAGGGCCGAGTTAAGAGCAGCAATGAAGAAGATGCTGGAGACAGAAGGACCTTACTTGTTGGATGTGATTGTACCACATCAAGAACATGTGCTGCCTATGATTCCTAGTGGTGGTGCTTTCAAAGATGTGATCACAGAAGGAGATGGAAGATGCGTATACTGA 1998 50.0 MSSMAAATSPCASKSFSKSSSFNLTKPFSRFDLSFSSLPHNPTFRRPLRICSTSLSNPSPKPSSTAASAAAVETSSIASSDIFVSRFAADEPRKGADILVEALERQGVTNVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGVFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVSEAFFLAISGRPGPVLIDIPKDVQQQLAVPNWNQPMKLPGYLSRLPKPPIDSHLEQILRLISESKKPVLYVGGGCLNSSEELRRFVKFTGIPVASTLMGLGAYPCADDLSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCGDVKLALQGMNRLLEKAQMLHFDFSAWREELNEQKSKYPLTFKTFDEAIPPQYAIQLLDELTNGEAIISTGVGQHQMWAAQFYKYKKPRQWLTSGGLGAMGFGLPAAMGAVVANPGAVVVDIDGDGSFIMNVQELATISVEKLPVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNESEIFPNMLKFAEACGIPAARVTKRAELRAAMKKMLETEGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRCVY 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26640693 26643089 - MELO3C026205.2.1 Cme02g02067 321956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g02067 665 Gene3D - 82 276 - -
Cme02g02067 665 MobiDBLite consensus disorder prediction 1 20 - -
Cme02g02067 665 Pfam Thiamine pyrophosphate enzyme, central domain 286 416 IPR012000 GO:0000287|GO:0030976
Cme02g02067 665 CDD TPP_PYR_POX_like 97 252 - -
Cme02g02067 665 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 66 663 IPR045229 -
Cme02g02067 665 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 479 634 IPR011766 GO:0003824|GO:0030976
Cme02g02067 665 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 457 657 IPR029061 -
Cme02g02067 665 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 90 271 IPR029061 -
Cme02g02067 665 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 94 257 IPR012001 GO:0030976
Cme02g02067 665 CDD TPP_AHAS 457 649 IPR039368 GO:0030976
Cme02g02067 665 SUPERFAMILY DHS-like NAD/FAD-binding domain 283 448 IPR029035 -
Cme02g02067 665 TIGRFAM acolac_lg: acetolactate synthase, large subunit, biosynthetic type 94 657 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Cme02g02067 665 Gene3D - 449 635 - -
Cme02g02067 665 ProSitePatterns Thiamine pyrophosphate enzymes signature. 516 535 IPR000399 GO:0000287|GO:0030976
Cme02g02067 665 PANTHER ACETOLACTATE SYNTHASE 66 663 - -
Cme02g02067 665 Gene3D - 285 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g02067 K01652 E2.2.1.6L, ilvB, ilvG, ilvI; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] - csv:101213339 1229.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02067 Cme-Chr2:26640693 Cme07g00973 Cme-Chr7:10593955 1.72E-44 dispersed
Cme02g02067 Cme-Chr2:26640693 Cme12g00059 Cme-Chr12:590288 7.93E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g102 . Blo16g00269 . . . Bpe13g00201 Bma06g00260 . . . Cma10g00060 Cma11g00031 . . . . Cpe04g01617 Bhi02g00519 . . . Hepe09g0046 . . Cla06g01743 Cam06g1933 Cec06g1983 Cco06g1988 Clacu06g1889 Cmu06g1831 Cre06g2646 . . Cone13ag0223 . . . . . . . Bda11g01597 . . . . . . Cmo10g00054 Cmo11g00033 . . . . . Cpe18g00907 . . . . . . . . . . . . . . Lsi06g01643 . Chy02g02664 Cme02g02067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007549 1 1 1 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 36