Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g02068 GGTGGAAGCCGAGAAACGAATCGTGAAGGCCTCTGTTACCTTATCTCAACTCTTTTCGGAGTTCTTTGTGTTTCTTTTCTTCTTTTTCTTCCTTCCTTCCATTTTCATCACTTCAAATATTTCTTCACATTCCCCAAATCTCCTCATTCTTCTTCCATTTGGGTCAACCGCCGCCGTCCCCGGCCGATGGACACCAACAATCAAGCTCAATCCTCTCCCTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAACAACAACAGCTTCAGATGTTCTGGTCCTTCCAACGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTCTTGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTCGCTAAGGCTTGTGAGCTTTTTATTCTTGAACTCACTATTAGGTCATGGCTCCACGCCGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCTGCTGCTATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTTCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGTATGGTTGGAGCCACTGCTAGTGGAGTTCCGTACTATTATCCGCCTATGGGTCAACCGGCGGGGGCTCCCGGGGGAATGATGATTGGGAGACCGGCAATGGATCCCACTGGAGTTTACGCTCAGCCGCCGTCCCAGGCCTGGCAATCCGTGTGGCAGACCGCTGCTGAGGATGGTTCTTACGCGAGTGGGGCCAGCAGCGGGCAGGGTAATCTTGATGGTCAGAGGTAG 849 51.12 GGSRETNREGLCYLISTLFGVLCVSFLLFLPSFHFHHFKYFFTFPKSPHSSSIWVNRRRPRPMDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26656121 26656974 - MELO3C026204.2.1 Cme02g02068 321957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g02068 282 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 64 281 - -
Cme02g02068 282 Pfam Core histone H2A/H2B/H3/H4 110 181 IPR007125 GO:0003677
Cme02g02068 282 SUPERFAMILY Histone-fold 70 190 IPR009072 GO:0046982
Cme02g02068 282 MobiDBLite consensus disorder prediction 56 78 - -
Cme02g02068 282 Gene3D Histone, subunit A 86 196 IPR009072 GO:0046982
Cme02g02068 282 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g02068 - - - csv:101213576 360.147
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00106 Cme-Chr2:787039 Cme02g02068 Cme-Chr2:26656121 4.30E-69 dispersed
Cme02g02068 Cme-Chr2:26656121 Cme07g01623 Cme-Chr7:22011662 2.04E-29 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g02068 . 97 281 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 4.3e-88 321.2
Cme02g00106 . 81 248 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.6e-53 205.7
Cme01g00287 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 7.7e-53 204.1
Cme02g00106 . 1 258 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.0 5.1e-57 218.0
Cme01g00287 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.6e-49 191.0
Cme02g02068 . 96 195 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.1e-43 171.0
Cme02g00106 . 22 248 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 5.4e-61 231.1
Cme01g00287 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.1e-52 202.6
Cme02g02068 . 96 255 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Cme02g02068 . 96 254 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.5e-38 155.2
Cme02g02068 . 97 281 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 3.5e-80 295.0
Cme02g00106 . 81 249 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 6.5e-50 194.5
Cme01g00287 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.9e-49 193.0
Cme01g00287 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.2e-64 242.3
Cme02g02068 . 97 220 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.0e-50 194.9
Cme02g00106 . 53 212 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 6.8e-50 194.1
Cme03g01414 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.0 5.1e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40959 PF00808 CBFD_NFYB_HMF 3.40E-17 CL0012 Cme TF