Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g02113 ATGGCCTCCTCCGAGGTTTCGATCAACCCCAATTCCGCCTCCTTCAACGACCATGCCGATTCTACCAAAGACACCTCCGATCCACCCAACGCTCTCTCTCCCAGGGATGCTGATATCGCTCTCTACACCGAGCTCTGGAATGCTTGTGCTGGTCCTCTCGTTTCTGTTCCTCGTGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCATATCGAACAGGTGGAAGCATCAACTAGTCAAGTGGCGGACCAACAGATGCCTGTTTATAACCTTCCATCAAAGATCCTCTGCCGCGTTATTAATGTGCACTTAAAGGCCGAACCAGAAACCGATGAGGTATTTGCACAGATCACTTTGCTTCCAGAGGCTAATCAAGATGAGCATGCTGTAGACAAGGAACCCCCACCTCCTCCCCCGCGGAGATTTCACGTGCATTCTTTTTGCAAGACTCTGACTGCTTCTGACACTAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGACGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCTACCCAGGAGTTGGTTGCAAAGGATTTGCATGGAAACGAATGGCGTTTCCGTCATATATTTCGAGGGCAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTCTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAGCTGCGCGTTGGTGTGAGACGTGCAATGAGACAACATGGCAATGTTCCATCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCTATTTCTACAGGCACAATGTTCACTGTCTACTATAAGCCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATCAAGAAGAGCTACACCATAGGAATGCGGTTTAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAACAGAGGTTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAGACTTCTACTATTTCTCGTCCGGAGAAAGTCTCACCGTGGAAAATTGAGCCGGCCCTTGCTCCTCCTGCACTGAATCCCCTTCCTATGACTAGACCTAAAAGGCCTCGATCGAACATGGTATCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGTGTTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATCGATGGCAGTGATCCAGATGTGGCCGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAGTTGATGTGGTTTCTACATCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGGAGTGAGCCAACCTACGCAGATCTACTGTCAGGTTTTGGAGCTGATATGGATTCTTCTCTTGGTGTTCGTGCTGCCATGGGAGATTCTGCAGTAGTCACTGCTAATTCAATCAGAAAGCATGCCATGGAACAAGATGGAAAATTTAGCTTCCTTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTCTCGCTCAACCTGGTTGACTCCAGTCAGAAGGGTCATATTCGGGCTGGTGACTTATCTTATCAAGTGAGAGGAAATGCTACCTTCAATGGATTTGGCGATCATTCCATATCCCATTGTCCTAGAACTGAACAGCCTCATGGAAACTGGCTGATGCCTCCACCTTCATCTCATTTTGACTATCCAATTCATTCAAGTGAACTGATGTCAAAACCTATGTTATTTCAGAACCAAGATATACTGAAACCCAAAGATGGGAATTGTAAGCTTTTCGGTATTTCCCTCGTTAAAAATCCTGCTATTCCAGACCCTGTAGGATTGAACAGAAACATGATGAACGAGGCAGATGTGATGCATTCCAATGTACATCAAATCCATTCCATCGAGTCTGGCCTGAAGTCTGAACTACCTAGGGGTTCAAAGTTGGCTGATAAGTCAGTTGCCATCAGTGAGGCCGATAAGTTGCAGCAAACATGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACGAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGTGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACGGATGATGAAGGTGACATGATGCTTGTTGGAGACGATCCTTGGCGGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAAGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGCGATGAAAATCCCTCTGTTGAAGGGGAAGAGGCAAAAGAGACCAAAAGTCAGGCAGATTTTGGTGCGGTACGGAAGGAGTTCAGCAGGGTAATGCAGCGTGGCCAAGGTTGCGGCCTTAAGTTAAAGGTAGATGGTAGAAATGATGTATTGAATTTTGGACATGTCCACTGTTATACGTAA 2616 46.33 MASSEVSINPNSASFNDHADSTKDTSDPPNALSPRDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTSQVADQQMPVYNLPSKILCRVINVHLKAEPETDEVFAQITLLPEANQDEHAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVSTSPDSSVLTREGSSRVTVDPSPASVFTRVLQGQEFSTLRGNFIDGSDPDVAEKSVMWPPSLDDEKVDVVSTSKKHGADSWIPPGRSEPTYADLLSGFGADMDSSLGVRAAMGDSAVVTANSIRKHAMEQDGKFSFLGGSSWSVLPSGLSLNLVDSSQKGHIRAGDLSYQVRGNATFNGFGDHSISHCPRTEQPHGNWLMPPPSSHFDYPIHSSELMSKPMLFQNQDILKPKDGNCKLFGISLVKNPAIPDPVGLNRNMMNEADVMHSNVHQIHSIESGLKSELPRGSKLADKSVAISEADKLQQTCKSQGTSARSCTKVHKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWREFCGMVRKIFIYTREEVQKMNPGSLNLKGDENPSVEGEEAKETKSQADFGAVRKEFSRVMQRGQGCGLKLKVDGRNDVLNFGHVHCYT 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26881616 26887678 - MELO3C026161.2.1 Cme02g02113 322002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g02113 871 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Cme02g02113 871 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 822 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme02g02113 871 Gene3D - 144 249 IPR015300 -
Cme02g02113 871 SMART B3_2 147 249 IPR003340 GO:0003677
Cme02g02113 871 MobiDBLite consensus disorder prediction 805 827 - -
Cme02g02113 871 MobiDBLite consensus disorder prediction 381 420 - -
Cme02g02113 871 Pfam Auxin response factor 273 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme02g02113 871 SUPERFAMILY CAD & PB1 domains 714 792 - -
Cme02g02113 871 PANTHER AUXIN RESPONSE FACTOR 2 30 822 - -
Cme02g02113 871 CDD B3_DNA 145 247 IPR003340 GO:0003677
Cme02g02113 871 ProSiteProfiles PB1 domain profile. 715 799 IPR000270 GO:0005515
Cme02g02113 871 MobiDBLite consensus disorder prediction 395 420 - -
Cme02g02113 871 Gene3D - 711 804 - -
Cme02g02113 871 Gene3D - 310 380 - -
Cme02g02113 871 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Cme02g02113 871 SUPERFAMILY DNA-binding pseudobarrel domain 144 276 IPR015300 -
Cme02g02113 871 Pfam AUX/IAA family 760 800 IPR033389 -
Cme02g02113 871 MobiDBLite consensus disorder prediction 1 34 - -
Cme02g02113 871 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02113 Cme-Chr2:26881616 Cme10g01685 Cme-Chr10:23353579 2.75E-41 dispersed
Cme11g01803 Cme-Chr11:26202658 Cme02g02113 Cme-Chr2:26881616 6.12E-75 dispersed
Cme02g02113 Cme-Chr2:26881616 Cme12g01152 Cme-Chr12:19599255 2.15E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40963 PF02362 B3 3.50E-21 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g02113 - - csv:101206845 1640.17