Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g02116 | ATGAATAAGTATGTCCGATACATTTTATATTTGGTATCACTCAATTGGTATGATTTAGTTTTGGTATATCTGTCAACTCGTATACTGATTGGTAAGGGAAAAGAGGCACCCCGGAGAAGGTGTAACAAGGAAAGGAAAAAAATAAAAGTGGATCCGAGGCGAGGGAAGAGGGCACTTTGTTCCGATGAATCGGAGGAAGAAAATCCGTTCCCGATCTACTCAGCTAGATCTGAACATGACACGTCGGCCATGGTATCTGCGTTAACTCAAGTGATAACGAGTGGGAGTGGTAGTGGGAGTGGGAGTAGCAGAAGCCTATCAGTAGTAGAAGAACCTGCAGCATCAGTGCGGGGAGATAATGAAGAAGGAGTGAAAAGGGAAAGCCGACATTATCGAGGAGTAAGACAGAGACCGTGGGGAAAATGGGCTGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGTTGGGCACCTTCGACACTGCCGAGGCTGCGGCACTCGCTTACGATGAAGCTGCCCTCAGATTTAAGGGCACAAAAGCGAAGCTTAACTTCCCTGAGAGACTTACCACCCCACCATCATACTCCTATGCCCCCTATCATCATCAGGATGATCACCAAGACCACCGCTTTTAG | 639 | 47.26 | MNKYVRYILYLVSLNWYDLVLVYLSTRILIGKGKEAPRRRCNKERKKIKVDPRRGKRALCSDESEEENPFPIYSARSEHDTSAMVSALTQVITSGSGSGSGSSRSLSVVEEPAASVRGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYSYAPYHHQDDHQDHRF | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 26908525 | 26909889 | + | MELO3C026158.2.1 | Cme02g02116 | 322005 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g02116 | 212 | MobiDBLite | consensus disorder prediction | 115 | 129 | - | - | |
Cme02g02116 | 212 | CDD | AP2 | 130 | 188 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g02116 | 212 | ProSiteProfiles | AP2/ERF domain profile. | 130 | 187 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g02116 | 212 | Pfam | AP2 domain | 130 | 179 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g02116 | 212 | SUPERFAMILY | DNA-binding domain | 130 | 188 | IPR016177 | GO:0003677 | |
Cme02g02116 | 212 | MobiDBLite | consensus disorder prediction | 94 | 109 | - | - | |
Cme02g02116 | 212 | PRINTS | Ethylene responsive element binding protein signature | 153 | 169 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g02116 | 212 | PRINTS | Ethylene responsive element binding protein signature | 131 | 142 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g02116 | 212 | Gene3D | AP2/ERF domain | 129 | 189 | IPR036955 | GO:0003700|GO:0006355 | |
Cme02g02116 | 212 | MobiDBLite | consensus disorder prediction | 94 | 129 | - | - | |
Cme02g02116 | 212 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF114 | 62 | 195 | - | - | |
Cme02g02116 | 212 | SMART | rav1_2 | 130 | 193 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g02116 | 212 | PANTHER | DNA-BINDING DOMAIN | 62 | 195 | IPR044808 | GO:0003700|GO:0009873 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g02116 | Cme-Chr2:26908525 | Cme08g01036 | Cme-Chr8:6708686 | 6.50E-33 | dispersed | |
Cme11g02369 | Cme-Chr11:30691737 | Cme02g02116 | Cme-Chr2:26908525 | 3.61E-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40964 | PF00847 | AP2 | 4.60E-15 | CL0081 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g02116 | - | - | csv:101206124 | 237.269 |