Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g02116 ATGAATAAGTATGTCCGATACATTTTATATTTGGTATCACTCAATTGGTATGATTTAGTTTTGGTATATCTGTCAACTCGTATACTGATTGGTAAGGGAAAAGAGGCACCCCGGAGAAGGTGTAACAAGGAAAGGAAAAAAATAAAAGTGGATCCGAGGCGAGGGAAGAGGGCACTTTGTTCCGATGAATCGGAGGAAGAAAATCCGTTCCCGATCTACTCAGCTAGATCTGAACATGACACGTCGGCCATGGTATCTGCGTTAACTCAAGTGATAACGAGTGGGAGTGGTAGTGGGAGTGGGAGTAGCAGAAGCCTATCAGTAGTAGAAGAACCTGCAGCATCAGTGCGGGGAGATAATGAAGAAGGAGTGAAAAGGGAAAGCCGACATTATCGAGGAGTAAGACAGAGACCGTGGGGAAAATGGGCTGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGTTGGGCACCTTCGACACTGCCGAGGCTGCGGCACTCGCTTACGATGAAGCTGCCCTCAGATTTAAGGGCACAAAAGCGAAGCTTAACTTCCCTGAGAGACTTACCACCCCACCATCATACTCCTATGCCCCCTATCATCATCAGGATGATCACCAAGACCACCGCTTTTAG 639 47.26 MNKYVRYILYLVSLNWYDLVLVYLSTRILIGKGKEAPRRRCNKERKKIKVDPRRGKRALCSDESEEENPFPIYSARSEHDTSAMVSALTQVITSGSGSGSGSSRSLSVVEEPAASVRGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYSYAPYHHQDDHQDHRF 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26908525 26909889 + MELO3C026158.2.1 Cme02g02116 322005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g02116 212 MobiDBLite consensus disorder prediction 115 129 - -
Cme02g02116 212 CDD AP2 130 188 IPR001471 GO:0003700|GO:0006355
Cme02g02116 212 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Cme02g02116 212 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
Cme02g02116 212 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677
Cme02g02116 212 MobiDBLite consensus disorder prediction 94 109 - -
Cme02g02116 212 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Cme02g02116 212 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Cme02g02116 212 Gene3D AP2/ERF domain 129 189 IPR036955 GO:0003700|GO:0006355
Cme02g02116 212 MobiDBLite consensus disorder prediction 94 129 - -
Cme02g02116 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF114 62 195 - -
Cme02g02116 212 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
Cme02g02116 212 PANTHER DNA-BINDING DOMAIN 62 195 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02116 Cme-Chr2:26908525 Cme08g01036 Cme-Chr8:6708686 6.50E-33 dispersed
Cme11g02369 Cme-Chr11:30691737 Cme02g02116 Cme-Chr2:26908525 3.61E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40964 PF00847 AP2 4.60E-15 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g02116 - - csv:101206124 237.269