Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00081 ATGGACATCAATCCTAGATCGTTTCTGTTTTCTCTTTTTCCCCACTTTTTCCCTTCATTCCTCTTCATTATTCTCCTCCTCTCCTCCCCTGCTTTCTCCTCTTTATATGATGAATGGTTCTTAAACTGCCAAGATTCGTTCAAATGCGACGGTTTTCTTGACAAGGGATTCCCTCTCTGGAGATATAATGGAACAGAATTTTGTGGTGCTTATCATGAGTCAATGAGGATCAAATGCGATGGAATCCGTTCGACCATAAAAATTGCGGGAGCAAGTTTCGAACTCCTGGGTCTTGGTATAAGCGATCAAATTCTTATAATTGCCGAAATCGGGTTTTCAGATGGATTTTGCTCGCCAGAAAAAAATATTTCGTCAAGTTCCATGTATGCGATCATTCCTGTATCTTATGACTGCGGGCTTCTAGACAAAAAACCTACTTGTTCAGGAATTAAATATAGGTACACGCCATTTGAGAACTTAACTGGGCCTAATTCTAATGAACGCTATTGTTGGTTAAGTGCAGTAGTGCCAATTTCACGATGGTTGCTTAAACAAGTTGGTGATGATTTCCGATTGGTAGCGCAGCATATCATAGAAGAGTTTAAGTCAGGCCGGGCGGTGGTAGACAGTCGAGTATGTAACAACTGCAATCCTGGTAGTGTTTATGTTTATGACTTCCAGTTGAGTCAAACAAGATGCTGCTGTCAATCTTCATTTGATAGGATTAAATTCTGCGCTTCCTCATCTTTTACCCAATCGCCAAATTATGCTGATGAGCCAAAGACAGCACTGCCCTCCGACGACTCAAAGAAGTCCAAAAAGGAAAAAGTGAAACCCCTTATAATTGGTGTTTCAATTGGAGGAGCATGTTTGGTTGCAATAATTATAGGATGCTGCATCTTTCTTTGTTTTCGGAAAAAGAAGAAGCAATATCCAAGTGGATCTGTAAGCAAAGAAGCTGGGCCTTCTCCTCATGTTTCTGATCCTATTTCAAACAAAGATTTGCCTCCTGCTCCTCTTTTGAACTCCTTTCAAAGTCAGAGCATTCCTTCTTATCCCTCTTCCAAATCCGATATTGAAACACCTACCACCACCAACCATGGCATTCGAGTATTCAATTATGCTGAACTCGAAACAGCTACCAATAATTTTGACCGTTCTCGAGAGCTTGGCGATGGAGGATTTGGCACTGTTTACTATGGGAAGCTTGTTGATGGGCGTGAAGTTGCTGTGAAGCGTCTATATGAACATAACTGCAAACGAGTGGAACAGTTCATGAATGAGGTAGACATCCTTGCTCATTTACAACACGATAACCTTGTCAAACTCTATGGCTGCACGTCCAGATATAGCCAAGGCCTTCTCCTTGTCTATGAATACATTCCCAATGGAACCGTAGCCGACCATCTCCACGGATCACGGGTGAAATTGGGTTTGCTCAGTTGGCCAATTCGGTTGCGGATCGCCATCGAAACAGCGAATGCACTCATGTACCTCCACCATTCAGAAATCATCCATCGCGATGTCAAAACCACTAACATTCTCCTTGACAACAACTTCACTGTCAAAGTGGCTGATTTTGGCCTTTCAAGGTCGTTCCCTACCGATGTAACTCATGTGTCCACTGCCCCACAAGGCACACCAGGCTATGTTGATCCTGAGTACTACCAATGTTATCAACTCACAACTAAGAGCGATGTATATAGTTTTGGAGTTGTTTTGATTGAGCTTATATCTTCGTTAAGAGCAGTCGACACAGATAGGAATCGACATGATATCAACTTAAGCAATATGGCAGTCAGTAAAATACGAAGTGGAGCATTGGATGAATTGGTCGATCCAAAGCTCGGTTTCAACGAGAATCATGAAGTGAGGAGTGCAACAACATCAGTTGCAGAGTTGGCTTTTCTCTGTCTTCAACAGGAAAGGGACTTGAGGCCTACAATGGATGAAGTCGTGAAGGTACTAAGAAAGATTGAGAATGACAAATCCAGTTCCGAGATGGCTAAAGTTGTTGATGTAAGAGTCATTGGAGATGATATTGAGCTCATAAAGAAAGCACCACCCTCATTTTCGCCAAATTCTGTCATAGCTAACAACTGGGTTGGCAGCTCAACCACCACAGATTCCTTGTGA 2136 42.42 MDINPRSFLFSLFPHFFPSFLFIILLLSSPAFSSLYDEWFLNCQDSFKCDGFLDKGFPLWRYNGTEFCGAYHESMRIKCDGIRSTIKIAGASFELLGLGISDQILIIAEIGFSDGFCSPEKNISSSSMYAIIPVSYDCGLLDKKPTCSGIKYRYTPFENLTGPNSNERYCWLSAVVPISRWLLKQVGDDFRLVAQHIIEEFKSGRAVVDSRVCNNCNPGSVYVYDFQLSQTRCCCQSSFDRIKFCASSSFTQSPNYADEPKTALPSDDSKKSKKEKVKPLIIGVSIGGACLVAIIIGCCIFLCFRKKKKQYPSGSVSKEAGPSPHVSDPISNKDLPPAPLLNSFQSQSIPSYPSSKSDIETPTTTNHGIRVFNYAELETATNNFDRSRELGDGGFGTVYYGKLVDGREVAVKRLYEHNCKRVEQFMNEVDILAHLQHDNLVKLYGCTSRYSQGLLLVYEYIPNGTVADHLHGSRVKLGLLSWPIRLRIAIETANALMYLHHSEIIHRDVKTTNILLDNNFTVKVADFGLSRSFPTDVTHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSLRAVDTDRNRHDINLSNMAVSKIRSGALDELVDPKLGFNENHEVRSATTSVAELAFLCLQQERDLRPTMDEVVKVLRKIENDKSSSEMAKVVDVRVIGDDIELIKKAPPSFSPNSVIANNWVGSSTTTDSL 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1163259 1172229 + MELO3C008149.2.1 Cme03g00081 322092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00081 711 CDD STKc_IRAK 390 659 - -
Cme03g00081 711 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 25 701 - -
Cme03g00081 711 Gene3D Transferase(Phosphotransferase) domain 1 461 682 - -
Cme03g00081 711 Pfam Protein tyrosine and serine/threonine kinase 387 655 IPR001245 GO:0004672|GO:0006468
Cme03g00081 711 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524
Cme03g00081 711 Gene3D Phosphorylase Kinase; domain 1 355 460 - -
Cme03g00081 711 SUPERFAMILY Protein kinase-like (PK-like) 358 663 IPR011009 -
Cme03g00081 711 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 25 701 IPR044652 -
Cme03g00081 711 ProSiteProfiles Protein kinase domain profile. 384 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00081 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Cme03g00081 711 SMART serkin_6 384 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00081 Cme-Chr3:1163259 Cme12g01858 Cme-Chr12:24854691 5.87E-140 dispersed
Cme03g00081 Cme-Chr3:1163259 Cme10g00237 Cme-Chr10:1558148 5.42E-156 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64715 PF07714 PK_Tyr_Ser-Thr 2.70E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00081 - - cpep:111808520 863.218