Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00112 ATGGATAGTAGTTATATAAACTTTCTCCCAACTTCCTCTTCCAGCTTCTTCCATAACTCATTAGCTATGGACGACCACGACGATGAGTTGGAAGAAGAAAGCAGTTTGAAAAAAATTAAAAGTGAAGTGTCTGGAGGGAAATTGAAGAAGAAGAAGACAAGAAAAAGGAGATTCGCATTTGAAACGAGGAGCCAAGTTGATGTTCTTGATGATGGGTATCGTTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACAACAAGTTTCCCAGGAGCTATTACAAATGTTCGAACGAAGGATGCAAAGTGAAGAAACAAATTCAACGGCTAACAAAGGATGAAGAAGTTGTATTGACAACCTATGAAGGAGTTCATTCCCATCCTATTGAAAAACCTCATGATTCCTTTCAAAATATCTTGACCCATATGCATATTTACTCTTCTTAG 444 37.39 MDSSYINFLPTSSSSFFHNSLAMDDHDDELEEESSLKKIKSEVSGGKLKKKKTRKRRFAFETRSQVDVLDDGYRWRKYGQKAVKNNKFPRSYYKCSNEGCKVKKQIQRLTKDEEVVLTTYEGVHSHPIEKPHDSFQNILTHMHIYSS 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1584861 1587998 + MELO3C008175.2.1 Cme03g00112 322123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00112 147 Pfam WRKY DNA -binding domain 70 127 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme03g00112 147 SUPERFAMILY WRKY DNA-binding domain 62 128 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme03g00112 147 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 31 144 - -
Cme03g00112 147 SMART WRKY_cls 69 128 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme03g00112 147 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 31 144 IPR044810 GO:0003700
Cme03g00112 147 Gene3D WRKY domain 53 129 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme03g00112 147 ProSiteProfiles WRKY domain profile. 64 129 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00112 Cme-Chr3:1584861 Cme06g01785 Cme-Chr6:20817270 1.52E-53 dispersed
Cme03g00112 Cme-Chr3:1584861 Cme06g00148 Cme-Chr6:896741 5.64E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40973 PF03106 WRKY 1.60E-25 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00112 - - csv:101212622 237.269