Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme03g00167 | ATGATATTAAACTCTCACCAGATGTCACCAAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAGCAACTTCAGGCTCAAGCCCAAGCGAGAGCTATGGCAGCCAGTGGTCTTCTTGGTCACACTGAATTAAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGTTAAGGCTTCAACTTGCTCTGCTAGATCGGGAATTCGACGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCAATGAGTGAGGAACAAATAAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACTCCTCTGTGAATCAGCAGGCTTCATCTTCAGAATCTAATGAGAAGAGACAAGATTCAGTTAATGCAGTTGGCAGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCGTGGCTGCGACAGCAGGGAACGTGCCCTGTCTGTAAATTCAGAGCAGTATCCGGATGGTCAGAACAGGGGCAAGGCGAAACCGATGCTTATATGGTTTAG | 678 | 44.99 | MILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDSSVNQQASSSESNEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV | 225 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2087251 | 2091706 | - | MELO3C008223.2.1 | Cme03g00167 | 322178 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme03g00167 | 225 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SDIR1 | 1 | 224 | - | - | |
| Cme03g00167 | 225 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 210 | IPR013083 | - | |
| Cme03g00167 | 225 | MobiDBLite | consensus disorder prediction | 124 | 155 | - | - | |
| Cme03g00167 | 225 | SUPERFAMILY | RING/U-box | 158 | 212 | - | - | |
| Cme03g00167 | 225 | PANTHER | TARGET OF ERK KINASE MPK-1 | 1 | 224 | - | - | |
| Cme03g00167 | 225 | Pfam | Ring finger domain | 163 | 205 | IPR001841 | - | |
| Cme03g00167 | 225 | MobiDBLite | consensus disorder prediction | 123 | 155 | - | - | |
| Cme03g00167 | 225 | SMART | ring_2 | 164 | 204 | IPR001841 | - | |
| Cme03g00167 | 225 | CDD | RING-H2_PA-TM-RING | 163 | 205 | - | - | |
| Cme03g00167 | 225 | ProSiteProfiles | Zinc finger RING-type profile. | 164 | 205 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g00308 | Cme-Chr1:2307730 | Cme03g00167 | Cme-Chr3:2087251 | 6.29E-14 | dispersed | |
| Cme03g00167 | Cme-Chr3:2087251 | Cme06g00403 | Cme-Chr6:2573969 | 1.15E-17 | dispersed | |
| Cme08g01283 | Cme-Chr8:9276339 | Cme03g00167 | Cme-Chr3:2087251 | 6.40E-06 | dispersed | |
| Cme03g00167 | Cme-Chr3:2087251 | Cme09g00271 | Cme-Chr9:2090379 | 4.51E-13 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme03g00167 | K16283 | - | csv:101216306 | 402.519 |