Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00178 ATGGCGAATTGGGGCGGAATTGGGAATCTTGCAATCACACCACTTGATCTTCAAAAAACAGAGCAACAACATACTACTAAGGATCATGAAGATGGGGATGGAGTTAAAGCCAAGAGGCGGCCACGAGGGCGGCCACCAGGCTCCAAAAACAAGCCGAAGCCACCGATTCTCATCGCCAAAAACACTCCCAACACCCTTCAAACCCACGTTTTCGAAATCGCCACCGCCACGGACATTGCCCACTCCATTTGCACCTTTGCCCACCGACGCCGCCGTGGGGTTTCCATTCTCAGCGCCACCGGCCTCGTCGATGACGTCACTCTCCGTCAACCCCCCGGCGTCATCACCCTCCACCAACGCTTCGAGATCTTGTCTCTCTCTGGCGCTTTCCTTCCCACGCCTTCCCCCCACGGAACTTCCGCATTGACCGTCTATCTCGCTGGCGGCCAAGGGCGTGTCGTCGGAGGCCTCGTCGCCGGCCCCCTAATAGCTGCCGCCCCCGTCGTAGTAGTTGCAGCTTCATTTACCAATGCTATGTATGAAAAACTGCCGATGGAAGAAGATGAAGAGAAAACAGAGAAGGATAAGCAATTGGAAGAAAACATTAACGGAAACAATTCAATGGGAGAATCGTCATCATTGGCAGCAGCAAGTTCTTTGGGAGTTCATAATTTGACTCCTAATACTCAAATTTCACAAGAAATGTTTTGGGCTCCTCCTCCATCTTATTAA 732 51.91 MANWGGIGNLAITPLDLQKTEQQHTTKDHEDGDGVKAKRRPRGRPPGSKNKPKPPILIAKNTPNTLQTHVFEIATATDIAHSICTFAHRRRRGVSILSATGLVDDVTLRQPPGVITLHQRFEILSLSGAFLPTPSPHGTSALTVYLAGGQGRVVGGLVAGPLIAAAPVVVVAASFTNAMYEKLPMEEDEEKTEKDKQLEENINGNNSMGESSSLAAASSLGVHNLTPNTQISQEMFWAPPPSY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2169055 2169786 - MELO3C008232.2.1 Cme03g00178 322189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00178 243 Pfam Plants and Prokaryotes Conserved (PCC) domain 68 177 IPR005175 -
Cme03g00178 243 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 213 IPR014476 GO:0003680
Cme03g00178 243 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 213 - -
Cme03g00178 243 MobiDBLite consensus disorder prediction 21 40 - -
Cme03g00178 243 MobiDBLite consensus disorder prediction 184 214 - -
Cme03g00178 243 MobiDBLite consensus disorder prediction 15 61 - -
Cme03g00178 243 SUPERFAMILY AF0104/ALDC/Ptd012-like 64 189 - -
Cme03g00178 243 MobiDBLite consensus disorder prediction 184 200 - -
Cme03g00178 243 CDD DUF296 67 163 IPR005175 -
Cme03g00178 243 Gene3D - 67 196 - -
Cme03g00178 243 PIRSF ESCAROLA 13 239 IPR014476 GO:0003680
Cme03g00178 243 ProSiteProfiles PPC domain profile profile. 63 199 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g00178 Cme10g00915 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00178 Cme-Chr3:2169055 Cme10g00915 Cme-Chr10:6686355 2.06E-65 dispersed
Cme03g00178 Cme-Chr3:2169055 Cme06g00517 Cme-Chr6:3249890 1.39E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00178 - - cmo:103485519 409.453