Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00181 ATGGACTTTCTTCACCTCAAAGACGCCTCCACCACTGCCGATGATTCTAACCGTTCTTCTTCGTCGTCGTCGTCATCCGGTGGACGGAAACGCTGCCGTATGCATTCGGTTTCACGGCGGTGTGAAAATGAAGATCATGAAAACAGGGGACAGAGGAATGATGATGATGATGATGATGATGATGAAGATAATGTTGTTGTTGATGATGATGTTAAATATGGAGTTACTTCTGTTTGTGGAAGAAGAAGAGAAATGGAGGATATGGTTTCTGTTCATCTTTACTTTACTAACCAAAAGAATCTACCCCAAATTCCCATTCACTTTTTTGGGGTCTTCGACGGCCATGGCTGCTCTCATGTCTCGATGAGCTGTATGAACCGAATGCATGAAATAGTTAAAGAAGAGATTGATGAAAAGGAATTGGGAGAAACAGAGGAATGGAAGAAAATAATGAGGAGAAGCTTTAGGCGTATGGATGAGGAAGTGATGGAGTACGCAAATAAAATTAAACAGAGAGATGCCGCCGTTGCCGGCTCCTCCTCCTCCTCCTCCCAAAATAATAGTTGCCGATGCGAACTCCAAACTCCTAGTCGATATGACACCGTCGGATCAACTGCTCTGGTTTTGTTATTAATGCCTCATAAGCTCATCATCGCCAACTGCGGCGATTCCCGCGCCGTCCTTTCCCGGAAAACTACCGGAATCTTCCCTCTCTCCTCCGACCATAAGCCGGATCGACCAGATGAATTGTCGCGAATAGAATCTGGAGGTGGGCACGTGATCTATTGGGAAGGGGCGAGAGTGTTGGGAGTTTTAGCAATGTCAAGAGCCATAGGCGACAGTTCTTTAAAACCATACGTAATACCAGAGCCGGAGGTGGTGATAATGGATCGAAGAATGGAGGATGAGTTCATCATACTGGCCACTGACGGCTTGTGGGACGTCGTTACAAATGAAACTGCATGCGACGTAGTTCGAGCCTGCATGCAAGCACAACAACCCTCAGTAGGATCTATGGGCGGCGGCTCTGACAAAACATGTTCCGACGCCTCTATTTTACTCACAAAGTTGGCCATCGCCAAGCGTAGTTCAGATAACATTAGCATTGTGGTTATAGATTTGGGAACACATCATCAACACCACCACTGCTAG 1152 46.35 MDFLHLKDASTTADDSNRSSSSSSSSGGRKRCRMHSVSRRCENEDHENRGQRNDDDDDDDDEDNVVVDDDVKYGVTSVCGRRREMEDMVSVHLYFTNQKNLPQIPIHFFGVFDGHGCSHVSMSCMNRMHEIVKEEIDEKELGETEEWKKIMRRSFRRMDEEVMEYANKIKQRDAAVAGSSSSSSQNNSCRCELQTPSRYDTVGSTALVLLLMPHKLIIANCGDSRAVLSRKTTGIFPLSSDHKPDRPDELSRIESGGGHVIYWEGARVLGVLAMSRAIGDSSLKPYVIPEPEVVIMDRRMEDEFIILATDGLWDVVTNETACDVVRACMQAQQPSVGSMGGGSDKTCSDASILLTKLAIAKRSSDNISIVVIDLGTHHQHHHC 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2201117 2202799 + MELO3C008235.2.1 Cme03g00181 322192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00181 383 PANTHER ALPHABET, ISOFORM E-RELATED 340 379 - -
Cme03g00181 383 PANTHER ALPHABET, ISOFORM E-RELATED 19 335 - -
Cme03g00181 383 MobiDBLite consensus disorder prediction 13 31 - -
Cme03g00181 383 ProSitePatterns PPM-type phosphatase domain signature. 108 116 IPR000222 GO:0043169
Cme03g00181 383 CDD PP2Cc 72 374 IPR001932 -
Cme03g00181 383 Gene3D - 60 382 IPR036457 -
Cme03g00181 383 SMART PP2C_4 60 372 IPR001932 -
Cme03g00181 383 MobiDBLite consensus disorder prediction 37 53 - -
Cme03g00181 383 SUPERFAMILY PP2C-like 71 375 IPR036457 -
Cme03g00181 383 ProSiteProfiles PPM-type phosphatase domain profile. 72 374 IPR001932 -
Cme03g00181 383 MobiDBLite consensus disorder prediction 1 66 - -
Cme03g00181 383 Pfam Protein phosphatase 2C 72 367 IPR001932 -
Cme03g00181 383 PANTHER PROTEIN PHOSPHATASE 2C 3 340 379 - -
Cme03g00181 383 PANTHER PROTEIN PHOSPHATASE 2C 3 19 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00181 Cme-Chr3:2201117 Cme04g01231 Cme-Chr4:17057698 4.15E-69 dispersed
Cme05g00439 Cme-Chr5:3938155 Cme03g00181 Cme-Chr3:2201117 8.86E-20 transposed
Cme12g00139 Cme-Chr12:1356184 Cme03g00181 Cme-Chr3:2201117 4.34E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00181 K14497 - csv:101220425 614.764