Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00184 ATGGCATCCATTTCAAAACGGCTACTCCTCTTCGCGGCGGCGCTACTCGCCGCCGCCGAAATCGCAACCTCCGTCACCCGATGTCCGGACTGCGGCGGTGCTGCCGTCCCCTATCCTCTAAGTACAAGCCCCACTTGTGGTGACCAATTGTACAAGATCCGTTGCGACGCAGGCTCACTGAAATTCGACACGCTAAACAACACGTACCCGATCATCTCAATCAACCCGTTGATCCAACGGCTGGTGATCCGCCCCTCAAATTTCATCCCCAACACGTGCGTCACAGCGGATATCGCCCACGAAGGAGTTCAACTGAACAGCACTTTACCGTTCAACGTGACGAGCGGGAACACGATCCTCTACTTCAACTGTACGGATACGCTGCTGCGCTCGCCGTTGAACTGTTCGTCGACGAGTCTGTGCCATTCGTACATCAAGGGATCGAGAGGAGCAGCGACGTGCGAGGTGGCGCCGTTGTGCTGCACGTTTCGAGCGGGTGGGTCGTCGAATTCGTACATGATTCGGGTGAGGGAATCGGGGTGTAGCGCGTACACGAGCTTTGTGAATTTGGACCCGAGTTTGGGAGTGGTTCAATGGCCGAACCCGGGTTTAGAGTTGCAGTGGCTTTTGCCGAGAGAACCGGTTTGTAATAGGGAGGCTGATTGTGACGGGAACGCGGTTTGTGGGGTTGATCCTAACGGGACGGGGTTGAGGCGTTGTGTTTGTAATTCTGGGTTTGTGTGGGATCCTGTTGCTGGAATCTGTTCTCAAAACACGTGTCATGATCCTGATGGGTGTAATCATCACCGAACTGCATTGATAGCCGGCGTTGTATCCGGCGTGGGTGCGGCGGCGGTCGTCGCAACAATAGCCATGCTATTGTACAATCGGCATAGAAGAGCAAAAGAAGCTCAAGATCGTTTAACAAAGGAGCGTGAAGCAATTTTAAATTCGAGCGGTGGAGGAGGAAGAGCGGCAAAGGTCTTCACCGGGAAAGAGATCAAGAGGGCCACCCACAACTTCTCCGCGGACCGCCTTCTGGGTGTGGGTGGCTACGGGGAGGTCTACAAAGGCGTTCTCGGGGACGGTACCGCCGTGGCCGTGAAGTGTGCGAAGCTCGGAAACGCAAAGGGGACGGACCAAGTCCTGAATGAGGTCCGAATCCTGTGCCAAGTTAATCACCGGAGTCTTGTTCGGCTTCTTGGTTGTTGCGTTGAATTAGAACAGCCAATTTTGGTGTACGAGTATATCCCTAACGGCACTCTTCTCGACCATTTACAAGGTAAGAATGACACAAAGCCTTTATCATGGGAGGAACGGCTCCGAATAGCGGAAGGCACAGCGGAGGGATTAGCATATCTTCATTTCTCAGCAGTTCCACCCATCTACCATCGGGACGTGAAATCCAGCAACATCCTATTAGACCACAAGCTAATCCCCAAAGTTTCCGATTTCGGCCTCTCTCGATTGGCTGAAACAGATTTAAGCCATATCTCGACTTGCGCCCAAGGAACTTTAGGCTACTTAGACCCTGAGTACTATCGAAACTATCAATTGACGGACAAGAGCGATGTGTATAGTTTTGGAGTAGTTTTACTTGAATTGTTGACGTCGGAGAAGGCCATTGACTTCAATCGGGAGGCCGACGACGTGAATTTGGCGGTTTACATGCAACGGTTAGTGGAGGAAGAGAGATTGGTGGATGGGATTGATCCGTGGTTGAAGAAAGGAGCGAGTGAGGTGGAGGTTGATACAATGAAGGCCTTGGGGTTTCTTGCAGTTGGGTGTTTGGAACAGAGAAGGCAGAATCGGCCTTCTATGAAAGAAGTGGTGGAGGAGATCCAATACATCATTAGCGTTGCCATTGCTAAGCCTTGA 1878 52.08 MASISKRLLLFAAALLAAAEIATSVTRCPDCGGAAVPYPLSTSPTCGDQLYKIRCDAGSLKFDTLNNTYPIISINPLIQRLVIRPSNFIPNTCVTADIAHEGVQLNSTLPFNVTSGNTILYFNCTDTLLRSPLNCSSTSLCHSYIKGSRGAATCEVAPLCCTFRAGGSSNSYMIRVRESGCSAYTSFVNLDPSLGVVQWPNPGLELQWLLPREPVCNREADCDGNAVCGVDPNGTGLRRCVCNSGFVWDPVAGICSQNTCHDPDGCNHHRTALIAGVVSGVGAAAVVATIAMLLYNRHRRAKEAQDRLTKEREAILNSSGGGGRAAKVFTGKEIKRATHNFSADRLLGVGGYGEVYKGVLGDGTAVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYIPNGTLLDHLQGKNDTKPLSWEERLRIAEGTAEGLAYLHFSAVPPIYHRDVKSSNILLDHKLIPKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSEKAIDFNREADDVNLAVYMQRLVEEERLVDGIDPWLKKGASEVEVDTMKALGFLAVGCLEQRRQNRPSMKEVVEEIQYIISVAIAKP 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2239235 2243181 + MELO3C029803.2.1 Cme03g00184 322195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00184 625 SUPERFAMILY Protein kinase-like (PK-like) 327 613 IPR011009 -
Cme03g00184 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Cme03g00184 625 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 622 IPR045274 GO:0007166
Cme03g00184 625 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Cme03g00184 625 Gene3D Transferase(Phosphotransferase) domain 1 417 622 - -
Cme03g00184 625 PANTHER OS05G0318100 PROTEIN 17 622 - -
Cme03g00184 625 CDD STKc_IRAK 347 615 - -
Cme03g00184 625 CDD TM_EGFR-like 267 303 - -
Cme03g00184 625 Gene3D Phosphorylase Kinase; domain 1 318 416 - -
Cme03g00184 625 SMART serkin_6 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00184 625 Pfam Protein kinase domain 343 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00184 625 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00184 Cme-Chr3:2239235 Cme08g02430 Cme-Chr8:31201131 0 dispersed
Cme03g01991 Cme-Chr3:27689823 Cme03g00184 Cme-Chr3:2239235 3.83E-90 dispersed
Cme05g01578 Cme-Chr5:25005634 Cme03g00184 Cme-Chr3:2239235 1.90E-44 dispersed
Cme12g01858 Cme-Chr12:24854691 Cme03g00184 Cme-Chr3:2239235 1.29E-77 dispersed
Cme03g00184 Cme-Chr3:2239235 Cme08g00521 Cme-Chr8:3232224 4.37E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64719 PF00069 Pkinase 2.20E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00184 - - csv:101220186 1169.45