Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme03g00212 | ATGACGACCGTCCAAGCTTCCCACGTTGTCGCAATGGAGGTAGAACAACACCAACAACACCCTCGCACTGACTCCGATGAAGTGCGGCGGTGTTCGGTCCACTCCAGGGCTGACATTCTGGAGGAAGAGGGGGTGGCGGTGGCGGTGGCGGCGGCGGCGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTTGAGATGGATCTCGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCAGGATTTGCCATCTGAGTTTGGATGCTTCTAATCATGAATCTGGAATTCCTATTGAGTTGGGTTGTTCTTGTAAAGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTCAACAGAGCAACGCAATGAACCAAACGAAGCAACAACAGCAACTGCTACAGCTGCCATAGTGATGCCACCACACTCTACAGAGGCTCGGAACTTCTGGCAAGGCCACAGG | 570 | 51.23 | MTTVQASHVVAMEVEQHQQHPRTDSDEVRRCSVHSRADILEEEGVAVAVAAAAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHSTEARNFWQGHR | 190 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2667375 | 2670350 | - | MELO3C008265.2.1 | Cme03g00212 | 322223 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme03g00212 | 190 | SMART | ringv_2 | 87 | 140 | IPR011016 | GO:0008270 | |
| Cme03g00212 | 190 | Pfam | RING-variant domain | 88 | 139 | IPR011016 | GO:0008270 | |
| Cme03g00212 | 190 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 75 | 149 | IPR013083 | - | |
| Cme03g00212 | 190 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 3 | 190 | - | - | |
| Cme03g00212 | 190 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 80 | 146 | IPR011016 | GO:0008270 | |
| Cme03g00212 | 190 | SUPERFAMILY | RING/U-box | 85 | 142 | - | - | |
| Cme03g00212 | 190 | PANTHER | ZINC FINGER, RING-CH-TYPE | 3 | 190 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g00212 | Cme-Chr3:2667375 | Cme08g00215 | Cme-Chr8:1443557 | 8.09E-20 | dispersed | |
| Cme12g00120 | Cme-Chr12:1245635 | Cme03g00212 | Cme-Chr3:2667375 | 3.14E-35 | wgd | |
| Cme03g00212 | Cme-Chr3:2667375 | Cme04g02676 | Cme-Chr4:32354974 | 1.07E-56 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme03g00212 | - | - | csv:101207404 | 348.591 |