Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00267 ATGAGAGGTTGGCATGAGACTCGTTCTTCATCTTCTTGTGCAGCTTGCAAATTGTTGAAAAGAAGATGTATTCCCACTTGTATTTTTGCTCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCATAAGGTTTTTGGGGCAAGTAATGTTAGTAAGATTTTGACTGAAGTTCCTGAAGAACAGAGAGAAGATACTGTTAATTCTTTGGCTTATGAAGCTGAAGCCAGGCTTAGAGATCCTGTTTACGGCTGCATTGGTGCTATAGCTTTGTTGCAGACTAAAATGGTGGAGCTTCAACATGATCTTGCTCTTGCTAAAGCCCGTCTCGCTCGTTACGCTCATAATAATACTTCCTCTTCTTCTTCTTCTTCTTCTTGTGCAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGCTGAGCAGAGTTCTTCTGATGATATCACCCAATATGGTTATTTATGTGATTTCACCCATTTTCCTTATCCATTTAAAGCTTGA 519 38.54 MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYAHNNTSSSSSSSSCAENCVVNMSYGGLSFSAEQSSSDDITQYGYLCDFTHFPYPFKA 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3441789 3442453 - MELO3C008309.2.1 Cme03g00267 322278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00267 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 148 - -
Cme03g00267 172 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Cme03g00267 172 Coils Coil 91 118 - -
Cme03g00267 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 148 - -
Cme03g00267 172 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00267 Cme-Chr3:3441789 Cme09g00420 Cme-Chr9:3984698 2.56E-49 dispersed
Cme03g00267 Cme-Chr3:3441789 Cme04g01850 Cme-Chr4:26268072 1.61E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40980 PF03195 LOB 1.40E-38 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00267 - - csv:101222226 330.872