Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cme03g00283	ATGGTCGAGAAAATGGGTCACAGTGATCAATATTCTGATGCAATTTCTTTACCTACAAATTCAATCAGGAAGAGGAAGTCACGGAGTAGACGAGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCATATAATGAATGTTTCGATTCCAGTAATGATGGTGGCAAGCTAATCCGTAAAGCTCCAGCTAAAGGATCTAAGAAAGGATGTATGAAAGGCAAAGGAGGACCCTTAAATTCACATTGCAATTACAGAGGTGTGAGACAGAGGACTTGGGGCAAATGGGTTGCGGAGATTCGTGAACCCAATAGAGGAAGTAGGCTTTGGCTTGGTACTTTCCCTACTGCCATTGAAGCCGCTCTTGCCTACGACGAGGCTGCAAGGACGATGTACGGTCAGACTGCTCGTTTAAACCTTCCCAACATTAAAAACAGAGGGCAGCTACAGGGGATTCTTTTGGAGGACTACTTGGGGCTGCGTAATTCGGATTCTTCAACCACTACTTCTACGTGTTCCGAGTCCACTACTACGACTTCAAACCAATCTGAGGTCTGTGTGCCTGAGGAGTTCACGGTGAGGCCACAACTTGTTCCCTTAAACGTTAAGAGTGAAGATGGAGAAGGAGAATCGAGGACCGGGGATCATGGCGATGAGACTGCAACACCGATGTGCTTAGAGAATCAAGTGAAACATGAGGATTGTAATGGTCAGACAGCTGCATTAGTGGCTGAGTTTCCTTGTTTGGATCAGTTGCAAAACTTTCAAATGGCTGAAATATTCGAGCCAAGGACGGGGCCTCAGACTGGTCCTATGTTGACTCCATTGAGCTTAGAGAAGCAAGTGAAGGATGAAGATCTGGATGCTGTATATCGTGAACGGAGTGATGATCAAGCAGTCTTATCAGAAGCTGGGATTTCAAGTCTATATGATTTACAGAACTTTGAAATGGATGAAATGTTTGATGTGGAAGAGCTTCTAAGCCTCATAAGTAGTGATTCCTTGCATGATCCAACAAACATCTTGAAGGGCAATGCAGATGGTTATACGAGCATGGTGCCTTCTCAAGTTGGCAGTATCGGGTCTGAAAAGCCACCAAATTCGTCATACCAAATGCAAAATCCTGACGCTAAGCTTCTCGGAAGTCCGCAACAAATGGAGCGAACTCCAGCGGATGTTGACTACGGATTTGATTTCCTGAAGCAGGGAAGGGAGGAGGATCTGAATGCGGCCGCAGATGATTGTGTTAGATACCTGAACGAAATTGGTGATTTAGGATTTTGA	1287	45.38	MVEKMGHSDQYSDAISLPTNSIRKRKSRSRRDRSTVAETLAKWKAYNECFDSSNDGGKLIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGQTARLNLPNIKNRGQLQGILLEDYLGLRNSDSSTTTSTCSESTTTTSNQSEVCVPEEFTVRPQLVPLNVKSEDGEGESRTGDHGDETATPMCLENQVKHEDCNGQTAALVAEFPCLDQLQNFQMAEIFEPRTGPQTGPMLTPLSLEKQVKDEDLDAVYRERSDDQAVLSEAGISSLYDLQNFEMDEMFDVEELLSLISSDSLHDPTNILKGNADGYTSMVPSQVGSIGSEKPPNSSYQMQNPDAKLLGSPQQMERTPADVDYGFDFLKQGREEDLNAAADDCVRYLNEIGDLGF	428

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
3	3598393	3600909	-	MELO3C008318.2.1	Cme03g00283	322294

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cme03g00283	428	ProSiteProfiles	AP2/ERF domain profile.	85	142	IPR001471	GO:0003700\|GO:0006355
	Cme03g00283	428	SMART	rav1_2	85	148	IPR001471	GO:0003700\|GO:0006355
	Cme03g00283	428	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	19	406	-	-
	Cme03g00283	428	Gene3D	AP2/ERF domain	85	143	IPR036955	GO:0003700\|GO:0006355
	Cme03g00283	428	CDD	AP2	84	143	IPR001471	GO:0003700\|GO:0006355
	Cme03g00283	428	PRINTS	Ethylene responsive element binding protein signature	86	97	IPR001471	GO:0003700\|GO:0006355
	Cme03g00283	428	PRINTS	Ethylene responsive element binding protein signature	108	124	IPR001471	GO:0003700\|GO:0006355
	Cme03g00283	428	Pfam	AP2 domain	84	134	IPR001471	GO:0003700\|GO:0006355
	Cme03g00283	428	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	19	406	-	-
	Cme03g00283	428	MobiDBLite	consensus disorder prediction	1	34	-	-
	Cme03g00283	428	SUPERFAMILY	DNA-binding domain	85	142	IPR016177	GO:0003677

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Cme03g00283	Cme10g01390	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cme03g00283	Cme-Chr3:3598393	Cme11g01471	Cme-Chr11:21648965	4.53E-47	dispersed
	Cme03g00283	Cme-Chr3:3598393	Cme08g02169	Cme-Chr8:27722698	2.28E-42	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	40981	PF00847	AP2	1.10E-14	CL0081	Cme	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cme03g00283	-		K09286	csv:101215431	692.189