Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00284 ATGGCAGCACCACCATCTCTATATTTGTTTGCCATTTTGGTCCTCTTTGCTTCGGCGGCGGCCTTGCATGGAATTAGACAACTTAGAACTGGGTGGGCTGATGGACCCGAGTTCGTGACTCAATGTCCAATCCGACCAGGAGGAAGCTATACTTACAGGTTTACCGTACAAGGACAAGAAGGGACCTTGTGGTGGCATGCGCATAGCTCGTGGCTTAGGGCTACTGTTTATGGAGCGTTGATTATTCATCCTAAAGAGGGAGATTCTTACCCTTTCCCAAAACCAAACAGGGAAGCAACACTTCTAATGGGCGAATGGTGGGATGCAAACCCTATTGATGTACTGAGACAAGCCACAAGAACAGGAGCAGCTCCTAATGTCTCTGATGCTTACACTTTCAATGGTCAACCAGGTGATCTATACAAGTGCTCTAGCAAAGATACAATAATTGTGCCCATAGATTCCGGCGAGACCAATTTACTGAGAGTAGTAAACTCCGCCTTAAACCAAGCTCTGTTTTTCACGGTGGCTAATCACAAACTCACAGTGGTCGGAGCCGACGCCTCCTACACAAAGCCCTTCACCACCTCTGTTTTAATGCTCGGCCCTGGCCAAACCACCGACGTTTTAATCTCTGGCAACCAAGTTCCCGCCCGGTACTACATAGCCGCACGTGCTTACCAAAGCGCCCAAAATGCACCTTTTGGCAACACCACCACCACTGCCATTCTCAACTACAAATCTGCCCCTTGCCCCGCCAAAAAAGGCTCCCCCACCATCAAACCAATCATGCCGTTTCTCCCTGCATTCAATGACACCGCCACCGTCACCGCATTCAGCCGAAAATTCCGCAGCCCAAGACCGGTCCCTGTCCCGACCAAAATCGACGAAAATTTGTTCTTCACTGTTGGATTAGGACTCAACAATTGCCCACGAAATTTCAAACCCAGCCAATGCCAAGGCCCCAACGGCACTCGATTCACAGCCAGTATGAACAACGTCTCCTTTGTTCTTCCTTCAAATATCTCGATTCTTCAAGCATTTCAACAAGGGATTCCCGGTGTTGTTACCTCTGATTTTCCGGCTAACCCACCTGTGAAATTTGATTATACCGGCAATGTTAGTCGGTCGCTTTTTCAACCAGTGCCTGGTACTAAAGGGTACAGATTGAAATATGGATCGACCGTACAAGTTGTGTTGCAGGACACTAGTATTGTAACGCCAGAAAATCACCCGATACATCTCCATGGTTACGATTTTTACATCATCGCAGAAGGATTTGGAAATTTTGACCCTAAAAAGGATACTAAAAAATTCAACCTCGTTGACCCTCCTCTTAGAAACACTGTCGCCGTCCCTGTAAATGGTTGGGCCGTCATACGATTCGTCGCCGATAACCCAGGTGCTTGGATAATGCATTGTCACCTAGACGTGCATATCACGTGGGGGCTAGCGATGGTGTTTCTTGTAGACAACGGTGTTGGGCATCTCCAGTCAATAGAGGCTCCGCCGCCGGATCTTCCCATATGCTAA 1533 48.21 MAAPPSLYLFAILVLFASAAALHGIRQLRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIHPKEGDSYPFPKPNREATLLMGEWWDANPIDVLRQATRTGAAPNVSDAYTFNGQPGDLYKCSSKDTIIVPIDSGETNLLRVVNSALNQALFFTVANHKLTVVGADASYTKPFTTSVLMLGPGQTTDVLISGNQVPARYYIAARAYQSAQNAPFGNTTTTAILNYKSAPCPAKKGSPTIKPIMPFLPAFNDTATVTAFSRKFRSPRPVPVPTKIDENLFFTVGLGLNNCPRNFKPSQCQGPNGTRFTASMNNVSFVLPSNISILQAFQQGIPGVVTSDFPANPPVKFDYTGNVSRSLFQPVPGTKGYRLKYGSTVQVVLQDTSIVTPENHPIHLHGYDFYIIAEGFGNFDPKKDTKKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWIMHCHLDVHITWGLAMVFLVDNGVGHLQSIEAPPPDLPIC 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3604770 3608247 - MELO3C008319.2.1 Cme03g00284 322295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00284 510 ProSitePatterns Multicopper oxidases signature 2. 473 484 IPR002355 GO:0005507
Cme03g00284 510 Gene3D - 308 510 IPR008972 -
Cme03g00284 510 Gene3D - 95 288 IPR008972 -
Cme03g00284 510 PANTHER LACCASE 21 510 - -
Cme03g00284 510 SUPERFAMILY Cupredoxins 287 510 IPR008972 -
Cme03g00284 510 SUPERFAMILY Cupredoxins 22 117 IPR008972 -
Cme03g00284 510 PANTHER MULTI-COPPER OXIDASE 21 510 IPR045087 -
Cme03g00284 510 SUPERFAMILY Cupredoxins 92 289 IPR008972 -
Cme03g00284 510 CDD CuRO_2_LCC_plant 100 246 IPR034285 -
Cme03g00284 510 Pfam Multicopper oxidase 360 492 IPR011706 GO:0005507|GO:0016491
Cme03g00284 510 Gene3D - 17 94 IPR008972 -
Cme03g00284 510 ProSitePatterns Multicopper oxidases signature 1. 468 488 IPR033138 -
Cme03g00284 510 CDD CuRO_3_LCC_plant 355 493 IPR034289 GO:0005507
Cme03g00284 510 TIGRFAM laccase: laccase 22 510 IPR017761 GO:0046274|GO:0048046|GO:0052716
Cme03g00284 510 Pfam Multicopper oxidase 22 86 IPR011707 GO:0005507
Cme03g00284 510 Pfam Multicopper oxidase 99 248 IPR001117 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00284 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - csv:101221525 999.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00284 Cme-Chr3:3604770 Cme12g00046 Cme-Chr12:454428 0 dispersed
Cme03g00284 Cme-Chr3:3604770 Cme08g02509 Cme-Chr8:31960537 1.18E-175 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g108 . Blo13g00845 . . . Bpe15g01182 Bma03g00220 . . . . . . . Sed11g2139 . . Bhi04g02285 Tan11g0298 Cmetu12g1547 . Hepe02g3301 . Lcy10g2180 . . . . . . . Cone1ag1641 Cone5ag0168 . . Lsi03g00290 Csa06g00202 . . Blo13g00845 Blo04g00208 Bda14g00225 . . . . . . Cmo04g03016 Cmo15g00161 Cma04g02890 Cma15g00146 Car04g02780 Car15g00157 . Cpe01g02501 . . . . . . . Cla11g00573 Cam11g0624 Cec11g0622 Cco11g0612 Clacu11g0744 Cmu11g0602 Cre11g1079 . . Chy03g00200 Cme03g00284
Vvi18g1314 . . . . . . . Bma01g02527 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme03g00284 . . Bda11g00855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme03g00284 . . Bda11g00856 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00284 Cme_Chr03 FPKM 3.620915 1.978828 0.430927 0.795625 4.616957 5.20583 4.008766 0.757064 0.804863 0.896443