Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00296 ATGCAATCTTCCTCAGTCCTAATTCTCGCATCCGTCGCTAGTTTCTCCGTCGCAACCCTTTTCCTCTTTTGCATCTTCTTCATCTGCAAACACTTCAAATCCCATCATTCAACCACTCGTCAAAGCCAAGTCCGCCACCGCAATATAGATCTCTCCTCCTTCACCGTCGATGAGAGCGCCTCCTTCGATCCTTCCCTCCGAATCTCCATGGCCGAACTCCGTATGGCTACCAAGAATTTCAGCAACGATTTAGTCGTCGGCGATGGCTCCTTCGGCCTCGTTTACAAAGCTCGTCTCTCCTCCGGCGCTACCGTCGCTATCAAGAGACTCAATCCTGACGCCTTCCAAGGATTCAGAGAATTCCGAGCCGAGATGGAAACTCTAGGTAAACTCCGCCATCGGAATATTGTTAAAATCTTGGGATACTGTGTTTCCGGCCCCGATAGGCTCTTGATCTACGAATTCATCGAGAGAGGAAGTCTCGATAATTGCTTGTACGAAACCTCCTCCGACGATCAGGATTCCGATGGCTATTTGCCCTCGCGGCAGCCATTGCCATGGGATACCAGATTGAAGATCATGAGAGGGGTTGCTAATGGGCTTTCCTATTTACATGGCCTTCCTCAGCCCATTATCCATAGAGATATTAAGGCCGGTAATGTCTTATTGGACTCTGAATTCGAGGCCCATATTGCTGATTTTGGCCTCGCCCGTATGATCGAAACTTCCAATTCCCACGTTTCCACTCAATTCGCCGGAACCATGGGGTATATGCCGCCGGAGTATAGGGCTGGAGTGACGGTGGCCACGGTGAAGGCTGACGTGTACAGTTTTGGGATTTTGATGTTCGAAGTTGCAATGGGCCAAAGGCCCAATTTGCCCATGTTGTTGGACGAAAGAGAAGTGGGCTTAATAGAATGGGCTAGGATTTTAGTGGCCCAAAATAGACATATGGAAATGGTTGATGCTAATATTTCGAACGACGAATTAGCAGAGGCCAATGTGAAGGAGTATTTTAGGATCGCTTGTTTGTGCACGAGTGAGAAGTCTAGAGAAAGGCCTCCTATGTCTAATGTGGTCGAGTTATTGGATCGGATTTGCGACGTGAAGTTGCGCAACGATGACGAGTATCAAGATAAGCTCGATATCACAGTTGTTCAGGATAAGCTCGATCAGTAG 1179 48.26 MQSSSVLILASVASFSVATLFLFCIFFICKHFKSHHSTTRQSQVRHRNIDLSSFTVDESASFDPSLRISMAELRMATKNFSNDLVVGDGSFGLVYKARLSSGATVAIKRLNPDAFQGFREFRAEMETLGKLRHRNIVKILGYCVSGPDRLLIYEFIERGSLDNCLYETSSDDQDSDGYLPSRQPLPWDTRLKIMRGVANGLSYLHGLPQPIIHRDIKAGNVLLDSEFEAHIADFGLARMIETSNSHVSTQFAGTMGYMPPEYRAGVTVATVKADVYSFGILMFEVAMGQRPNLPMLLDEREVGLIEWARILVAQNRHMEMVDANISNDELAEANVKEYFRIACLCTSEKSRERPPMSNVVELLDRICDVKLRNDDEYQDKLDITVVQDKLDQ 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3795027 3796855 - MELO3C008328.2.1 Cme03g00296 322307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00296 392 PANTHER OS01G0253100 PROTEIN 1 365 IPR045271 GO:0004714|GO:0006468
Cme03g00296 392 SUPERFAMILY Protein kinase-like (PK-like) 62 363 IPR011009 -
Cme03g00296 392 Gene3D Phosphorylase Kinase; domain 1 37 155 - -
Cme03g00296 392 Pfam Protein tyrosine and serine/threonine kinase 85 363 IPR001245 GO:0004672|GO:0006468
Cme03g00296 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Cme03g00296 392 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524
Cme03g00296 392 CDD STKc_IRAK 86 366 - -
Cme03g00296 392 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 365 - -
Cme03g00296 392 ProSiteProfiles Protein kinase domain profile. 80 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00296 392 SMART serkin_6 80 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00296 392 Gene3D Transferase(Phosphotransferase) domain 1 156 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00296 - - - cmo:103485602 775.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00296 Cme-Chr3:3795027 Cme06g01191 Cme-Chr6:9341956 1.10E-74 dispersed
Cme03g00296 Cme-Chr3:3795027 Cme11g01574 Cme-Chr11:23333440 1.35E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1346 . . . . Bpe02g00205 . . Bma01g02515 . Cmo15g00590 . . . . . . Cpe13g00693 Bhi04g01757 . . . . . Lcy10g1364 . . . . . . . . . . . . . . Cme03g00296 . . . . . . . . . . . . . Car04g02364 Car15g00542 Cpe01g02126 . . . . . . . . . . . . . . . Lsi08g00568 . Chy03g00493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010752 0 1 0 1 1 0 2 0 0 1 1 1 2 1 0 1 0 0 2 0 1 1 1 0 1 1 1 1 0 1 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64723 PF07714 PK_Tyr_Ser-Thr 1.30E-45 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00296 Cme_Chr03 FPKM 13.071718 16.312235 12.409307 12.427395 7.091615 7.59738 7.483818 16.787132 15.437613 16.148561