Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00297 ATGAAGCTTGTGGCTGAATTTTATGAGCATTTTTTGATGGTAATGATAGACCTCCCATTATACTACAATATAGCAGAAGAGGCAAAAGAAGCATCGCACCTACACAAGAAGCAGAAGGAGGAGGATATTGCAGTCTGCGAATGCAAGTTTGATGCTAACGATAACGATAGTGCTTGTGGGGAGGGGTGCTTGAATGTATTAACCAGCACTGAGTGTACTCCTGGACATTGTCCCTCTGGTGTTCATTGCAGGAACCAGAGATTCCAGAAATGTGAATATGCAAAAACAAAGTTGTTCAAAACAGAAGGCCGTGGGTGGGGCCTTTTAGCTGATGAGAACATCAAGAACGGACAATTTATTATTGAATATTGTGGGGAAGTTATTTCTTGGAAGGAAGCAAAACGGAGATCTCACACTTATGAAAATCAGGGGCTCAAAGATGCTTACATCATCTCGCTCAATGCCTCTGAATCAATTGATGCCACTAGAAAGGGAAGTCTTGCTAGATTTATCAATCATTCTTGCTTCCCAAACTGTGAGACAAGGAAGTGGAATGTGTTGGGTGAAATAAGGGTTGGAATATTTGCAAAGCAAGACATTTCCATAGGGACTGAGTTGGCATATGATTATAATTTCGAATGGTATGGAGGTGCCAAGGTTCGCTGCCTTTGTGGTGCGAGCAGCTGTTCAGGATTCCTTGGTGCCAAGTCTCGTGGCTTCCTGGAGGACACCTATTTGTGGGAAGATGACGATGATAGGTATTCTGTTGAGAAAATTCCACTTTACGACTCTGCAGAGGATGAGCCTTCCGTTATGCTCCACACAGCATTGAATAACACATATTCTGAGTTTGAAGGTTACCTGAAAAATGAGGACCCAATAATCGTGGACGACGATTTGGGAGCTGAACAGCAGCTGGGATCCACTGCATTTATTGATACCTCAAAGGATATAGTTCAATTGCAAAATATAGTTGTAGGAGAAATTAAAAATGAAGCAAAAGAGGAGCCAGAAGATCATCCACAAAATACGCAGCAGAACTTTTCTCATCAAAATGCAATGATATCTCGTATTCGAAGTAATACTGCTTGCCATAACTATCGCATTGGACCTAGACCCGTGGCCAAGAAACGATCAAGAAACTTATCTAATGGAAGGACAAAAAACTTTTCTCTGAAGCAAGTAGATGCAAAATATGTCGCTCAACTGTTAGAGATGAAAGAAGCACAGGACGAAGTCTTGCAGTATGAGGAAACAAAGAAAAAAGTGACTGCCGAACTTGATTCGTTGTACAATGAAATACGACCTGCCATTGAAGAATATGAAAGAGATAGCCAAGACAGTGTAGCTACAAGTGTGGCGGAAAAGTGGATAGAAGCAAGCTGTTTGAAACTTAAGGCAGAATTTGATCTTTATTCTTCTATAGTAAGAAATGTTGCTTGCACACCTTTAAGGTCATGTGTCTCTACTGAACCTCAAGCTCTCGAAGCAGACGTCGACAACGACCTGAAATTGTTAACTAATTAG 1527 41.26 MKLVAEFYEHFLMVMIDLPLYYNIAEEAKEASHLHKKQKEEDIAVCECKFDANDNDSACGEGCLNVLTSTECTPGHCPSGVHCRNQRFQKCEYAKTKLFKTEGRGWGLLADENIKNGQFIIEYCGEVISWKEAKRRSHTYENQGLKDAYIISLNASESIDATRKGSLARFINHSCFPNCETRKWNVLGEIRVGIFAKQDISIGTELAYDYNFEWYGGAKVRCLCGASSCSGFLGAKSRGFLEDTYLWEDDDDRYSVEKIPLYDSAEDEPSVMLHTALNNTYSEFEGYLKNEDPIIVDDDLGAEQQLGSTAFIDTSKDIVQLQNIVVGEIKNEAKEEPEDHPQNTQQNFSHQNAMISRIRSNTACHNYRIGPRPVAKKRSRNLSNGRTKNFSLKQVDAKYVAQLLEMKEAQDEVLQYEETKKKVTAELDSLYNEIRPAIEEYERDSQDSVATSVAEKWIEASCLKLKAEFDLYSSIVRNVACTPLRSCVSTEPQALEADVDNDLKLLTN 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3804756 3813278 - MELO3C008329.2.1 Cme03g00297 322308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00297 508 Pfam SET domain 105 211 IPR001214 GO:0005515
Cme03g00297 508 Coils Coil 392 433 - -
Cme03g00297 508 ProSiteProfiles SET domain profile. 94 211 IPR001214 GO:0005515
Cme03g00297 508 ProSiteProfiles Post-SET domain profile. 218 234 IPR003616 -
Cme03g00297 508 SUPERFAMILY SET domain 43 231 IPR046341 -
Cme03g00297 508 Pfam AWS domain 54 91 IPR006560 GO:0005634|GO:0018024
Cme03g00297 508 SMART PostSET_3 218 234 IPR003616 -
Cme03g00297 508 ProSiteProfiles AWS domain profile. 41 92 IPR006560 GO:0005634|GO:0018024
Cme03g00297 508 SMART shorttest3 41 93 IPR006560 GO:0005634|GO:0018024
Cme03g00297 508 Gene3D SET domain 18 244 IPR046341 -
Cme03g00297 508 PANTHER SET DOMAIN PROTEINS 31 445 - -
Cme03g00297 508 SMART set_7 94 217 IPR001214 GO:0005515
Cme03g00297 508 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 31 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00297 - - - cmo:103485603 1038.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00297 Cme-Chr3:3804756 Cme08g00513 Cme-Chr8:3175273 2.90E-19 dispersed
Cme11g00341 Cme-Chr11:3539015 Cme03g00297 Cme-Chr3:3804756 1.26E-10 dispersed
Cme11g02398 Cme-Chr11:30848108 Cme03g00297 Cme-Chr3:3804756 9.42E-12 dispersed
Cme01g00396 Cme-Chr1:2829949 Cme03g00297 Cme-Chr3:3804756 6.73E-08 transposed
Cme02g01028 Cme-Chr2:15233445 Cme03g00297 Cme-Chr3:3804756 1.13E-37 transposed
Cme03g00490 Cme-Chr3:7179647 Cme03g00297 Cme-Chr3:3804756 7.61E-50 transposed
Cme04g02064 Cme-Chr4:28027989 Cme03g00297 Cme-Chr3:3804756 1.62E-22 transposed
Cme05g00767 Cme-Chr5:9332624 Cme03g00297 Cme-Chr3:3804756 1.89E-41 transposed
Cme06g01133 Cme-Chr6:8683159 Cme03g00297 Cme-Chr3:3804756 7.07E-22 transposed
Cme11g00068 Cme-Chr11:564239 Cme03g00297 Cme-Chr3:3804756 1.80E-09 transposed
Cme11g02426 Cme-Chr11:31072742 Cme03g00297 Cme-Chr3:3804756 1.84E-18 transposed
Cme03g00297 Cme-Chr3:3804756 Cme08g02217 Cme-Chr8:28369299 2.57E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1348 . . . . . . . . . Cmo15g00591 . . . . . . . Bhi04g01759 Tan11g1119 . . . . . . . . . . . . . . . . . . . Cme03g00297 . . . . . . . . . . . . . . Car15g00543 . . . . . . . . . . . . . . . . . . Chy03g00494 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010525 1 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40982 PF00856 SET 2.30E-18 No_clan Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00297 Cme_Chr03 FPKM 279.035858 300.218781 0.0 0.0 0.0 0.18303 0.0 0.0 0.0 0.0