Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00300 ATGGATTCAATTCTCATGCAATTATCCCAACCACTATCACTCAAATCCACACTCCTCAACGCAATTCGAACACCTCCTTCCATTTCTTCAATCTCCCTCCGAGGAAGTCTTCACTTGATCCAGCGGAGGCACTTCAAGCTGGAGAGCACTAAAAATGGCGGCACTGATACCCAACGCGATCTCCCTTTCGACGAAGCAGCATTCGAGGCCGAGAGATCTCGCCTCGACGCCCAAGCTAGAAAATCTATGGCCGAAGCTTCAATGAGGGACACTGAAGGCGCTTCGGACGACGACCCAAAAGCTTGGAAGTGGGTCATCCGAAAACGCATTTGGGATTTCATGGAGTCGCAAAATGTCGCTGCAAATCCTCGTCCCGTTCACCATCGTATCCCTAATTTCATCGGTGCCATGGAAGCTGCTAATAGATTGTGCGAATTGGAAGTATTTAGCGATTCACAGTGCGTGAAGGTTAATCCGGATTCTCCTCAAAAGGGTGTGAGGCTTCTTACGCTTACGGGTGGCAAAAAACTGTTAACACCTCAGCCTCGGTTGAGAACAGGGTTTTTCTCCATAGTCGAATCTGGGATGTTGACTCCAGCTACCATTAAGGAAGCTTGTACTTCTGTTGGGGTAGCAAAGTATGGAAAGCCAATTGGACTGGATGAAAAGATTAAAGTTGATCTGATCGTTATTGGTTCTGTTGCTGTTGACCCCAAAACGGGTGCTCGGCTTGGCAAAGGAGAGGGTTTTGCAGAATTAGAATATGGAATGTTGCGATATATGGGAGCCATTGATGACTCAACTCTAATAGTTACTTCTGTGCACGATTGCCAATTGGTTGATGATATTCCAGTTCAGAAGCTATTAGTCCACGATGTGCCTGTAGACATCGTATGCACTCCAACGCAGGTCATTTTAACCAACACGAAAATCCCTAAACCCCAAGGCATTTACTGGGAAATGCTGTCTCCTGAGAAGCTTAGCCAAATTCGAATACTCAGGGAGCTCAAACGTCGGATCGAGAGGGAGACTGGAAAACTGCTGCCATGTGGTCCATCAGAGAAACTTCCACCTACAGCTCAACGAACCTCGAGACCTGGAAAACGTGCATTCTCTAAGAAGTGA 1125 47.02 MDSILMQLSQPLSLKSTLLNAIRTPPSISSISLRGSLHLIQRRHFKLESTKNGGTDTQRDLPFDEAAFEAERSRLDAQARKSMAEASMRDTEGASDDDPKAWKWVIRKRIWDFMESQNVAANPRPVHHRIPNFIGAMEAANRLCELEVFSDSQCVKVNPDSPQKGVRLLTLTGGKKLLTPQPRLRTGFFSIVESGMLTPATIKEACTSVGVAKYGKPIGLDEKIKVDLIVIGSVAVDPKTGARLGKGEGFAELEYGMLRYMGAIDDSTLIVTSVHDCQLVDDIPVQKLLVHDVPVDIVCTPTQVILTNTKIPKPQGIYWEMLSPEKLSQIRILRELKRRIERETGKLLPCGPSEKLPPTAQRTSRPGKRAFSKK 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3880416 3884503 - MELO3C008332.2.1 Cme03g00300 322311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00300 374 PANTHER 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED 90 366 IPR002698 -
Cme03g00300 374 Pfam 5-formyltetrahydrofolate cyclo-ligase family 103 301 IPR002698 -
Cme03g00300 374 MobiDBLite consensus disorder prediction 347 374 - -
Cme03g00300 374 MobiDBLite consensus disorder prediction 76 96 - -
Cme03g00300 374 SUPERFAMILY NagB/RpiA/CoA transferase-like 102 320 IPR037171 -
Cme03g00300 374 Gene3D - 137 313 IPR024185 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00300 K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] - csv:101222878 704.131
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1354 . . . . . . . . . Cmo15g00594 . . . . Sed11g1366 . Cpe13g00688 Bhi04g01760 Tan11g1122 Cmetu03g1405 . Hepe02g2802 . Lcy10g1360 Cla08g00721 Cam08g1149 Cec08g0739 Cco08g0845 Clacu08g0857 . Cre08g0657 . . Cone17ag0777 . . . . Cme03g00300 Blo17g00140 . . Bda13g01424 . Bpe14g00433 . Bma02g00159 . . . . . . Car15g00546 . . . . . . . . . . . . . . . . Lsi08g00563 . Chy03g00497 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009182 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00300 Cme_Chr03 FPKM 5.380841 6.599538 31.763563 35.05521 3.858866 4.152205 4.165181 0.945436 0.704776 0.820487