Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00308 ATGAAGATCCGTTTATTGTTGCTTGTGTTCTTGTGTTTTTTGTTTCATATGTGTTACTCTTCTGTTACCATTGTTGTTGATGGTGTTTCAGATTGGAAAGATCCCTCTGTCCATATTGGAGATTCCATCATTTTCAAGCACAAGTTTCATTATGAGCTCTTCATTTTCCGTGATCAAAGAGCTTTTGATCTTTGCAATTACACTCATGCCACTCTTCTCACCAAACCCAATTCCACTTCATTCATGTGGCATCCATCAAGGCTTGGCATTTTCTTCTTTTCCTTCAACAATGGCTCTAAAAGCTCTTGCAATGGCTCTCAAAAGTTTGCTGTGAAGGTCTCTGCTTCATCTCCGCCTCAAAGTTCCCACCTTTCTCCACATAACCCTCCAATGGCGGCTCCGGCACCGGTTTCCAGTGGAGTTTTGCCGTCTACTCCGGCATACCCTTGGCCGTTTCACCCTCGGCAGGGGGCGTCGTCGCCAAGTCCGTCGCCGGGAATGCCGCCGAGTGCTAGTGTGCCGTTGACGGTGCCGGCGAAAGGAGGAGGTATGGCGTTTATTAACAGTAATCCGGCGGTTCCACTTCCCACCGGCGAAGTGGATACGGCCACTATTCGACCTTTGCAAACATCGAACGATGGAACTCATAGGAATGTGCAGGTAATTATGGCAATTCCTCTTCTACTTAAAATGACTTTAATTTCAATCTTGTTTCTATAG 720 46.25 MKIRLLLLVFLCFLFHMCYSSVTIVVDGVSDWKDPSVHIGDSIIFKHKFHYELFIFRDQRAFDLCNYTHATLLTKPNSTSFMWHPSRLGIFFFSFNNGSKSSCNGSQKFAVKVSASSPPQSSHLSPHNPPMAAPAPVSSGVLPSTPAYPWPFHPRQGASSPSPSPGMPPSASVPLTVPAKGGGMAFINSNPAVPLPTGEVDTATIRPLQTSNDGTHRNVQVIMAIPLLLKMTLISILFL 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3930173 3932295 - MELO3C008336.2.1 Cme03g00308 322319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00308 239 MobiDBLite consensus disorder prediction 156 172 - -
Cme03g00308 239 Gene3D - 21 116 IPR008972 -
Cme03g00308 239 PANTHER OS04G0422700 PROTEIN 4 234 - -
Cme03g00308 239 PANTHER OS04G0422700 PROTEIN 4 234 - -
Cme03g00308 239 SUPERFAMILY Cupredoxins 23 113 IPR008972 -
Cme03g00308 239 MobiDBLite consensus disorder prediction 152 175 - -
Cme03g00308 239 MobiDBLite consensus disorder prediction 114 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00308 - - - csv:101214313 402.519
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1371 . . . . . . . . . . . . . . . . Cpe13g00686 . . . . . . . . . . . . . . . . . Cone20ag0376 . . . Cme03g00308 Blo17g00145 . . Bda13g01431 . Bpe14g00429 . Bma02g00167 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007849 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00308 Cme_Chr03 FPKM 98.503845 108.77726 108.628845 106.378944 18.928232 20.945782 21.441902 41.788925 41.453003 38.828217