Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00315 ATGTCATTCCGTAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGACGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGACCAGTTTATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCACCCGAATTATTATGTGATGTGGTTCGAAGACTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGAAATGTCGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAATGCCCTGAATTATCTGGGAAGATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCTCGCGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCAGACGATATATCAAGATCGAGCAACGGATATATTGGAAAGCTAAGATCAAATTTTCTGGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATTCCAACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCAAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATATGAGTTAAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCAGTTCCAGGCCAGCCTGAGCTCAATCCTCGACCTCTCGAAGACTCATTTCGTAGTATCTCATTCTCCAAGTCGATCGACCATTCCACTGAGTTCAGCAGTTCCCGTTTCTCCGATGTTGCGGGAATGCTGGTTGATGAAGATGGCGAGGGGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTACAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACGGTTGCATCTGTAAAGAACTTTCAGCTGATTGCTGCAACCTCACCTGCTGCAGAAGCACCCGTACCGTCGCAGCCGCCTCCCCAGCCCACCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTTGGAAAGGTTGGTAAGGACATGTTTACGATGGATTATCGATACCCGTTGTCTGCATTCCAGGCTTTTGCTATATGTCTAAGCAGCTTTGACACGAAATTGGCATGTGAATAG 1299 46.04 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVYEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKCPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPTQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3994795 3998980 - MELO3C008341.2.1 Cme03g00315 322326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00315 432 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Cme03g00315 432 Gene3D - 48 104 - -
Cme03g00315 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Cme03g00315 432 Pfam F-box domain 53 99 IPR001810 GO:0005515
Cme03g00315 432 Pfam Tub family 114 427 IPR000007 -
Cme03g00315 432 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 432 - -
Cme03g00315 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Cme03g00315 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Cme03g00315 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Cme03g00315 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cme03g00315 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cme03g00315 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cme03g00315 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Cme03g00315 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Cme03g00315 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Cme03g00315 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Cme03g00315 432 PANTHER TUBBY-RELATED 1 432 - -
Cme03g00315 432 MobiDBLite consensus disorder prediction 368 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00315 Cme-Chr3:3994795 Cme03g00617 Cme-Chr3:10036402 0 dispersed
Cme03g00315 Cme-Chr3:3994795 Cme06g00687 Cme-Chr6:4481950 1.58E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40984 PF01167 Tub 1.10E-115 CL0395 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00315 K19600 - csv:101203074 847.81