Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00317 ATGAAGAGCTTTTTAGGTTATGTAGAGGCCATGAGGGTCCACAAGCCCTATATTGCAATGTTATTTGTTCAATGTGTTTATTCAGGAATGGCTTTGTTCTCTAAAGCAGCCATTTCTCAAAAAGGCATGAACCCAGCCATCTTCGTCTTCTATCGTCAAGCTTTTGCTACCGTTGCCATGGCTCCTCTCGCCTTCTTACTCGAACGAAAAAAGGAAGTTCCTTTATCTTTCAAGTTCCATTCCAAAGTGTTCTTGGTTTCTCTTATTGGGGTCACTTTGAGTTTAAACCTTTATTACGTAGCAATCAACCATACATCAGCAACATTTGCAGCTGCCACTACCAATACCATCCCGGCCATTACCCTCCTGTTGGCTCTCCTTTTCAGATATGAAAGCATTTGCATAAGAAAAGTTGAAGGGATGGCAAAATTGATGGGAGCAATAATAGGTTTTTCGGGGGCTTTAGTGTTTGCATTTGTGAAAGGTCCACCAATGAAATTCATGAATTGGTATCCACAAACAAATAACATTACTAATTCATTTCAACCTTATTCCACATTGGAATGGATTAAGGGTTCATTCACTATGCTTTCAGCCAACCTTGCTTGGTCTTTTTGGCTTGTTCTGCAGGCCTCGATTGTGAAGGAATATCCAGCAAAATTGAGAGTTACAACTTTGCAATGCTTCTTTAGCTTAATACAATCAGCTTTGTGGGCTTTGGTAATGGAAAGAAACCCACAAGCTTGGAAGCTTGGATGGAATCTTCAACTCTTCTCTGTTGCCTATTGCGTAAACATCTCTCTCTTTTCTCTCCCTAAAGGTGTAATTGTGACGGGAATGACGTATTGGCTACAAATATGGTGTGTGGAGAAGAAAGGGCCAGTTTTCACAGCTATGTTTACTCCATTAGCACTCATCATAACAGCAATCTTTTCAGCATTGCTATGGAAAGAATCCCTTCATTGGGGAAGTGTTGGTGGAGGCATTTTGCTTGTGATGGGACTTTATTTTGTTCTATGGGGAAAGAAGAGAGAAGAAGAAGTAGCAGCTAAAACCAAGATAAATGATCAACAACAACGACATGACACTAAGGAGGCCGAAACCATTTTGGAGTGCATTACAACACATCATTGA 1134 40.48 MKSFLGYVEAMRVHKPYIAMLFVQCVYSGMALFSKAAISQKGMNPAIFVFYRQAFATVAMAPLAFLLERKKEVPLSFKFHSKVFLVSLIGVTLSLNLYYVAINHTSATFAAATTNTIPAITLLLALLFRYESICIRKVEGMAKLMGAIIGFSGALVFAFVKGPPMKFMNWYPQTNNITNSFQPYSTLEWIKGSFTMLSANLAWSFWLVLQASIVKEYPAKLRVTTLQCFFSLIQSALWALVMERNPQAWKLGWNLQLFSVAYCVNISLFSLPKGVIVTGMTYWLQIWCVEKKGPVFTAMFTPLALIITAIFSALLWKESLHWGSVGGGILLVMGLYFVLWGKKREEEVAAKTKINDQQQRHDTKEAETILECITTHH 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4019876 4022452 - MELO3C008342.2.1 Cme03g00317 322328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00317 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 345 - -
Cme03g00317 377 Pfam EamA-like transporter family 15 148 IPR000620 GO:0016020|GO:0016021
Cme03g00317 377 Pfam EamA-like transporter family 191 339 IPR000620 GO:0016020|GO:0016021
Cme03g00317 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 150 - -
Cme03g00317 377 PANTHER WAT1-RELATED PROTEIN 13 352 - -
Cme03g00317 377 PANTHER WAT1-RELATED PROTEIN 13 352 IPR030184 GO:0016021|GO:0022857
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00317 - - - csv:101215033 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00317 Cme-Chr3:4019876 Cme11g00082 Cme-Chr11:656276 2.14E-92 dispersed
Cme03g00317 Cme-Chr3:4019876 Cme10g00877 Cme-Chr10:6138411 1.96E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1380 . . . . . . . . Cmo04g02564 . . . . . . . . Bhi04g01775 . . . Hepe02g2137 . Lcy10g1352 Cla08g00712 Cam08g1139 Cec08g0728 Cco08g0836 Clacu08g0847 . Cre08g0648 . . Cone17ag0785 Cone20ag0379 . . . Cme03g00317 . . . Bda13g01413 . . Bma01g00742 . . . . . . Car04g02357 . Cpe01g02117 . . . . . . . . . . . . . . . Lsi08g00554 . Chy03g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00317 Cme_Chr03 FPKM 10.440443 13.609207 9.53867 9.9447 1.670051 1.374458 1.395742 1.117378 0.798024 1.123781