Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00331 ATGTCTGAACCTTCAACTTACTCAAACCACTTTCCTTCTCCTCTCATTTCCGTTTCGATGATGGATTTGAACTTTACTGCCCGGAAGCCTCCGCATACGGCGGCGAGGATGGACATAGAACACATGCCTGAAGCTCCACACCGTAGCTATCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGTTTCGCTAATTTCGACGATCTTCTCCTCTTTGACTCTCCCGACGTCGATTTATCGTCTTCTCTTCCTTCTCCCTCTCCGTCACCGTCCCCGACGCCGTCGGGGGCTCGTATGGCCGTCGATTCCTTTAATTCCAAGTCCCCTGAAGACGCCTCTACCACAAAACCTAGGGCTGGAAACGGTAACTCCGCTTCCTTCTTCAATTCTCACTATCGGAGCTTATCGATGGATTCCGACTTCTTTGAGGGCTTGGGGATGGCCGGAGATGGGAGTGACGGTGAAATACTTGCCGGGAGAGTGACGGCAGGGGAGAAGAAGATTGGTCGTCATAGGCATAGCAATTCCATGGATGGGTCTTTGACTTCCTCGTTTGAAGGTGATTCCACTGTGGTAATTGATTCTTCCAAGAAGGCTATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGGGCTAAGAGGATTCTGGCGAATAGACAATCTGCTGCACGATCCAAGGAGAGAAAAATACGTTACACTAATGAATTAGAGAAGAAGGTGCAAATGCTTCAATCAGAAGCTACTTCCCTTTCTGCTCAGGTCACTGTGTTACAGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGATTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACATTGAGGGAGGAAGTACAGCGACTTAAGATAGCTGCTGCCCAACTGCCTGTTGCAAATGGCAACTCGTTCAACATGGGAGGAGGAGGGCTACCTCCTCAATTCCCTCCTCTCCAAACATCATTGCTTCAATTTGGCAACTCTCAGAATCATCAACACCCACAGCTGCTTCACGTGTCTCAACCTGATGCTCGAGGAGGGTCTCCACCGTCCCAGCTTCCAGGAATTTAA 1113 49.69 MSEPSTYSNHFPSPLISVSMMDLNFTARKPPHTAARMDIEHMPEAPHRSYHHRRSHSDTSFRFANFDDLLLFDSPDVDLSSSLPSPSPSPSPTPSGARMAVDSFNSKSPEDASTTKPRAGNGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILAGRVTAGEKKIGRHRHSNSMDGSLTSSFEGDSTVVIDSSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLREEVQRLKIAAAQLPVANGNSFNMGGGGLPPQFPPLQTSLLQFGNSQNHQHPQLLHVSQPDARGGSPPSQLPGI 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4324576 4326975 + MELO3C008356.2.1 Cme03g00331 322342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00331 370 Pfam bZIP transcription factor 214 270 IPR004827 GO:0003700|GO:0006355
Cme03g00331 370 SUPERFAMILY Leucine zipper domain 214 266 IPR046347 GO:0003700|GO:0006355
Cme03g00331 370 MobiDBLite consensus disorder prediction 94 124 - -
Cme03g00331 370 MobiDBLite consensus disorder prediction 319 370 - -
Cme03g00331 370 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 26 355 - -
Cme03g00331 370 SMART brlzneu 210 274 IPR004827 GO:0003700|GO:0006355
Cme03g00331 370 Coils Coil 289 309 - -
Cme03g00331 370 CDD bZIP_plant_RF2 215 264 IPR044759 GO:0003700|GO:0006355
Cme03g00331 370 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 212 275 IPR004827 GO:0003700|GO:0006355
Cme03g00331 370 Coils Coil 237 257 - -
Cme03g00331 370 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 26 355 - -
Cme03g00331 370 Coils Coil 265 285 - -
Cme03g00331 370 MobiDBLite consensus disorder prediction 331 351 - -
Cme03g00331 370 Gene3D - 213 265 - -
Cme03g00331 370 MobiDBLite consensus disorder prediction 78 124 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g00331 Cme10g01249 CCT
Cme03g00331 Cme10g01249 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00679 Cme-Chr1:6132062 Cme03g00331 Cme-Chr3:4324576 5.11E-122 dispersed
Cme01g01319 Cme-Chr1:16542908 Cme03g00331 Cme-Chr3:4324576 3.91E-51 dispersed
Cme03g00331 Cme-Chr3:4324576 Cme06g00865 Cme-Chr6:5925532 3.08E-61 dispersed
Cme03g00331 Cme-Chr3:4324576 Cme01g00456 Cme-Chr1:3307587 8.74E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40986 PF00170 bZIP_1 3.30E-07 CL0018 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00331 K20557 - csv:101215277 536.184