Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00342 ATCAATAAATATTCCCCAATCTCATTTCTCTACTTCCTTTCTCCTCCAATTTTCCCTCTCTCGCTCTCATTCCCATGGCCTTCCCTTGTCTTCCTTGATTCCATGGCGGATATGGATTTTGTTGAAGGCGTTGGTGAGAGTTCTTCGCCGCCTCGAAGCTTTGCTGCTGGATTCTGTGCTGCCCACGATGTTCGGAACGATGTTTATACTAGGTTAGTTGAGTGTGGACATGAGGAGGCTGTTTCTAATCCTCAATTTCGCGAGAACTTGGATGCTCACTTCAATCGTTTGCCTCCGAGTTACGGACTTGATGTTAACATGGAGAAGGTGGAAGATGTTTTGTTACATCAAAAGCTTCTTTCCCTAGCAAAGGATCCAGAGAAGTGCCCTGTTTATCACATTCGTTTTCTGGAGCACGTAAGTACTAAGTCAGATGGCAATGATGATCACGTTTTTCTTGATAGTATGCTTTTAAGTGGTTCATCTAATGAAGCAGCCGATAGAAGGCTTCCATTGTCACACAAAAGAACTCGAGGAAATATAATTGACTTTGAGGCTTGTTCCAAGCTTGAGGACTTAAATTTGGATGTTAGGAAAAACTCGAAGGCCATGGATAGGAGGCCAGGTAATATTGGACATGTACTGATACACGAAGTGATATTTTCAACTATTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTGCTTTCTGATATAGGACTTAACATTCGAGAAGCACATGTGTTTTCAACAACTGATGGTTACTCTTTGGATGTATTTGTGGTGGATGGATGGCCTATTGAGGAAACTGATGGATTGTACGAAGCTATGGAAAAAGCAGTGGCTAGATATGAGGGATCGTGGTCTGGTTCTTCACATTCTCATCCAGTGGTCAAGAAAACATTAGACGCCCAGGTAAAATCAGCAGATTGGGAAATAGATAGACGGTTACTGAAGATAGGTGAAAGAATTGCATCAGGATCTTGTGGTGATTTGTACCATGGATTTTATCTTGGTCAAGATGTAGCTGTCAAGATATTAAGGTCTGAAGACCTAAATGCTGATTTAGAGGATGAGTTCAATCAAGAAGTGGCTATTCTCAGGAAGGTCCAGCACAAAAATGTAGTTCGTTTTGTAGGTGCTTGTACAAGCTCCCCACATTTGTGTATTGTAACAGAGTATATGCCAGGAGGGAGTCTTTATGATTACTTGCACAAGAATCATTGCGTGCTGAAGCTCTCGCAACTGCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGAATACTTACATTTAAATAACATTATCCATAGAGACTTGAAGACAGCAAATCTCCTAATGGACACTCAACAGGTTGTAAAGGTGGCAGATTTTGGAGTTGCACGATACCAGAGTGAAGGAGTAATGACAGCAGAAACCGGAACATACAGATGGATGGCTCCTGAGGTAATAAATCATCTGCCATATGATCAGAAAGCAGATATTTTCAGTTTTGCGATTGTGTTGTGGGAATTAGTAACAGCAAAGGTTCCTTATGATTCCATGACACCATTACAAGCTGCCCTTGGAGTAAGACAGGGACTACGTCCAGATCTTCCCAAAAATGTTCACCCTAAATTGTTGGATTTGATGCAAAGATGTTGGGATGCAGAACCTGTAAATCGGCCTCCATTTACTGAGATAAAAGTTGAACTCAGAAGTCTCCTAGAAGAAGTTGAGATGTGTACAAAATATGAAGAAAATTGTGCAGCAGTTAATGGGAGCTAA 1770 41.3 INKYSPISFLYFLSPPIFPLSLSFPWPSLVFLDSMADMDFVEGVGESSSPPRSFAAGFCAAHDVRNDVYTRLVECGHEEAVSNPQFRENLDAHFNRLPPSYGLDVNMEKVEDVLLHQKLLSLAKDPEKCPVYHIRFLEHVSTKSDGNDDHVFLDSMLLSGSSNEAADRRLPLSHKRTRGNIIDFEACSKLEDLNLDVRKNSKAMDRRPGNIGHVLIHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPIEETDGLYEAMEKAVARYEGSWSGSSHSHPVVKKTLDAQVKSADWEIDRRLLKIGERIASGSCGDLYHGFYLGQDVAVKILRSEDLNADLEDEFNQEVAILRKVQHKNVVRFVGACTSSPHLCIVTEYMPGGSLYDYLHKNHCVLKLSQLLKFAIDVCEGMEYLHLNNIIHRDLKTANLLMDTQQVVKVADFGVARYQSEGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELVTAKVPYDSMTPLQAALGVRQGLRPDLPKNVHPKLLDLMQRCWDAEPVNRPPFTEIKVELRSLLEEVEMCTKYEENCAAVNGS 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4558702 4576633 - MELO3C008367.2.1 Cme03g00342 322353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00342 589 SUPERFAMILY Protein kinase-like (PK-like) 301 570 IPR011009 -
Cme03g00342 589 PRINTS Tyrosine kinase catalytic domain signature 494 516 IPR001245 GO:0004672|GO:0006468
Cme03g00342 589 PRINTS Tyrosine kinase catalytic domain signature 537 559 IPR001245 GO:0004672|GO:0006468
Cme03g00342 589 PRINTS Tyrosine kinase catalytic domain signature 393 406 IPR001245 GO:0004672|GO:0006468
Cme03g00342 589 PRINTS Tyrosine kinase catalytic domain signature 430 448 IPR001245 GO:0004672|GO:0006468
Cme03g00342 589 PRINTS Tyrosine kinase catalytic domain signature 475 485 IPR001245 GO:0004672|GO:0006468
Cme03g00342 589 SUPERFAMILY ACT-like 217 287 IPR045865 -
Cme03g00342 589 Gene3D Transferase(Phosphotransferase) domain 1 397 587 - -
Cme03g00342 589 ProSiteProfiles Protein kinase domain profile. 319 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00342 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Cme03g00342 589 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 49 577 - -
Cme03g00342 589 CDD STKc_MAP3K-like 325 562 - -
Cme03g00342 589 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 49 577 - -
Cme03g00342 589 SMART serkin_6 319 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00342 589 Pfam Protein tyrosine and serine/threonine kinase 319 565 IPR001245 GO:0004672|GO:0006468
Cme03g00342 589 Gene3D Phosphorylase Kinase; domain 1 306 396 - -
Cme03g00342 589 ProSiteProfiles ACT domain profile. 218 292 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00342 Cme-Chr3:4558702 Cme06g02352 Cme-Chr6:30841256 3.53E-174 dispersed
Cme09g00995 Cme-Chr9:13965623 Cme03g00342 Cme-Chr3:4558702 3.44E-31 dispersed
Cme03g00342 Cme-Chr3:4558702 Cme08g00296 Cme-Chr8:1888947 1.31E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64724 PF07714 PK_Tyr_Ser-Thr 3.50E-71 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00342 - - csv:101216231 1109.36