Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00380 ATGGCAGATCCTTTTAGCTATGCAAATGCCGACCGTGATATCGAGCAGGCATTAATTGCATTGAAGAAGGGTGCTCAACTACTAAAATATGGTCGTAAAGGAAAGCCGAAGTTCTGTCCATTTAGGCTTTCTAGTGATGAATCTTCCTTGATCTGGATTTCCAGTAAAGGTGAAAGGAGTTTGAAGTTAGCTTCAATCTCACGAATTATACCTGGACAAAGAACTGCTGTCTTTGAACGGTATCTTCGTCCAGAAAAGGATTACTTATCATTCTCTCTTATATACAACAACGGGAAGCGATCCCTTGATCTGATTTGTAAGGATAAAGTTGAGGCAGAGGCTTGGATTTCTGGCCTGAAAGCTTTAATTGCATCTGGTCAAGGTTGTGAATTGACTTCAAATAGCCCAAGTGACAGTTCTCACAGCGTGAATAGAGATAACAGCTCTCCAGAATTTTTTGTCGGTTACAACGCAAATATATCTCTGAAGACTTCTCAACCTGAAAATAACATTGCAAAGTCGGAAAGAGCTCATGTATCATTAAACCAAACAAATATGCAAGTAAAAGGATCTAGTTCTGATGTTATGCGAGTTAGTGTTTCAAGTGCTCCCAGCACCTCCAGCCATGGGTCTGCGCCTGATGATTGTGATGCTCTAGGTGATGTATACATATGGGGTGAGATTGTTGGTGACAATATTGTGAAGATTGGGGCTGAAAAAAATAGTAGTTACATTACCTTGAGGACAGATGTGCTTCTGCCAAGACCTTTGGAGTCTAACATTGTTCTAGACATACATCATATAGCCTGTGGAGTTAGGCATGCTGCGCTAGTGACAAGGCAAGGGGAAGTGTTTACATGGGGTGAGGAATCTGGAGGCCGCCTTGGCCATGGTGTGGTGAAGGATGTAATTCAACCTCGTATGGTTGAATCCTTGGCAGCTAGCAGTATCGTTTTTGTTGCTTGTGGAGAGTTCCATACATGTGCTGTTACAATAATGGGAGAGCTTTATACATGGGGTGATGGTACCCACAATGCAGGGCTTCTTGGTCATGGCAGTGATGTTAGCCACTGGATACCAAAGAGAGTCTCTGGTCCGCTTGAAGGACTTCAAGTTACTTCAGTGACATGTGGTCCATGGCATACAGCTCTGGTGACGTCGATGGGTCAGCTTTTTACATTTGGTGATGGAACATTTGGTGCACTGGGCCATGGAGACAGAGAAAATATTTCATATCCAAAAGAAGTGGAATCTTTATCAGGCCTGAGGACTATTGCTGTTGCATGTGGGGTGTGGCATACTGCTGCTGTAGTTGAAGTTATTGTGACACAATCTAGTTCGAGCATTTCATCGGGTAAACTATTTACATGGGGCGACGGAGATAAAAATCGTCTGGGGCATGGAGATAAGGAGCCCAGGCTTAAACCCACATGTGTGCCGGCACTAATTGATTATGATTTCCACAAAGTTGCTTGTGGTCACAGCATTACTGTTGGTTTGACTACTTCAGGGCAAGTTTTCTCAATGGGAAGTACTGTTTATGGACAACTTGGGAATCCCAGTGCAGATGGAAAGATACCTTGCTTGGTAGAGGATAAGCTTTTTGGGGAATCTGTTGAAGAAGTTTCATGTGGTGCATATCATGTGGTGGTATTAACGTCCAAAAATGAAGTTTATACATGGGGAAAGGGTGCAAATGGGAGATTGGGTCATGGTGATGTTGAAGATCGGAAGACACCAACTCTGGTAGAAGCTTTGAAGGACAGACATGTGAAATATATAGCATGTGGTTCAAATTACACAGCTGCCATTTGTCTTCACAAGTGGGTTTCTAGTGCTGAGCAGTCACAGTGCTCTGCTTGCAGACAGGCGTTTGGGTTTACACGGAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCACTCTTGCAGTTCAAGAAAAGCATTAAGAGCAGCACTTGCTCCTAATCCTGGCAAACTATATCGTGTGTGTGATTCATGTTATACAAAACTGATGAAGGCAGCAGAAGCTATTAATAATAATAGGAAAAATGCTATGCCAGGCCTCTCAGGTGAGAACAAGGATAGGATTGATAAGACTGATATGAAAATATCGAAGTCAGTTCCTTCCAACTTGGATTTGATAAAGCAGTTAGACAACAAAGCGGCTAAACAAGGAAAGAAGGCTGATACCTTCTCCCTTGTTCGATCCTCTCAAGCACCTTCGCTATTGCAGCTGAGAGATGTTGTATTATCAACTGCTGTTGATCTGCGACGGACAGCTCCAAAACCTGTCCTCACTGCTTCTGGAGTAAGTTCTAGATCTGTGTCGCCTTTCTCAAGGAAACCAAGCCCTCCTCGATCTGCCACTCCTGTTCCTACAGCATCAGGACTTTCCTTCTCCAAAAGTATAACTGATAGTTTGAAGAAAACAAATGATCTTTTGAATCACGAAGTGCTTAAATTGCGTTCACAGGTTGAGAGCCTGAGGCAGAAATGTGAACTCCAGGAACAGGAGCTTCAGAAATCTTTGAAGAAAACACGAGAAGCCATGGCCTTGGCTGCCGAGGAATCTGGTAAATCTAAAGCAGCCAAAGAAGTCATCAAGTTACTAACTGCTCAGCTTAAAGATATGGCTGAGAGGTTACCACCTGGAGTATATGACGCTGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGAGGCTACCATTTGAGTATGAATGGAGAGCGTCATTCACGATCTGATTCAGTTAGCAGCTACTCCTGTGCATCTCCAACGGCATCTGAAGCTGCTGCTTGGCAAGGGAGCTATGGCACAGCTCATTCATATAGGGAGCTTTCTGGAGCGAATGAAAGCACTCATCAAGATAGAATTGACAGTCGAGATTCTAGACTTCCAAATAACGGAGGTGCTCAGCCAGTTAGCAGTAGTGCATCGATGGCAGCTGTTGGCAAGGATTCTGATTCCTTACAAGATGGTGACAATAATTCTAAAGCCAAAACTTCTCCAGTGGTCAATGCTACTCAAGTTGAGGCTGAATGGATTGAACAATATGAGCCTGGTGTATATATTACTCTTGTGGCTCTAAGGGATGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAAGCAGAAAATTGGTGGTCAGAGAACCGCGAAAAGGTATACGAGAGATATAACGTTCGCAACTCGGACAAGTCTTCAGTTTCGGGTCTGACGTCACAAAGAGCAGACGATGCAGTTTCAATAGCTTCACAGCAACTATAG 3309 43.64 MADPFSYANADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWISSKGERSLKLASISRIIPGQRTAVFERYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEAWISGLKALIASGQGCELTSNSPSDSSHSVNRDNSSPEFFVGYNANISLKTSQPENNIAKSERAHVSLNQTNMQVKGSSSDVMRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEIVGDNIVKIGAEKNSSYITLRTDVLLPRPLESNIVLDIHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVVKDVIQPRMVESLAASSIVFVACGEFHTCAVTIMGELYTWGDGTHNAGLLGHGSDVSHWIPKRVSGPLEGLQVTSVTCGPWHTALVTSMGQLFTFGDGTFGALGHGDRENISYPKEVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYDFHKVACGHSITVGLTTSGQVFSMGSTVYGQLGNPSADGKIPCLVEDKLFGESVEEVSCGAYHVVVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYTAAICLHKWVSSAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDSCYTKLMKAAEAINNNRKNAMPGLSGENKDRIDKTDMKISKSVPSNLDLIKQLDNKAAKQGKKADTFSLVRSSQAPSLLQLRDVVLSTAVDLRRTAPKPVLTASGVSSRSVSPFSRKPSPPRSATPVPTASGLSFSKSITDSLKKTNDLLNHEVLKLRSQVESLRQKCELQEQELQKSLKKTREAMALAAEESGKSKAAKEVIKLLTAQLKDMAERLPPGVYDAEKMRSVHLSNGLESNGGYHLSMNGERHSRSDSVSSYSCASPTASEAAAWQGSYGTAHSYRELSGANESTHQDRIDSRDSRLPNNGGAQPVSSSASMAAVGKDSDSLQDGDNNSKAKTSPVVNATQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYERYNVRNSDKSSVSGLTSQRADDAVSIASQQL 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5277130 5286312 - MELO3C008391.2.1 Cme03g00380 322391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00380 1102 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 375 385 IPR000408 -
Cme03g00380 1102 SMART fyve_4 607 675 IPR000306 GO:0046872
Cme03g00380 1102 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Cme03g00380 1102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 685 IPR013083 -
Cme03g00380 1102 Gene3D - 13 130 IPR011993 -
Cme03g00380 1102 CDD FYVE_like_SF 617 670 - -
Cme03g00380 1102 ProSiteProfiles BRX domain profile. 1019 1074 IPR013591 -
Cme03g00380 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Cme03g00380 1102 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Cme03g00380 1102 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 427 437 IPR000408 -
Cme03g00380 1102 CDD PH_PLC_plant-like 12 124 - -
Cme03g00380 1102 MobiDBLite consensus disorder prediction 972 991 - -
Cme03g00380 1102 Pfam Transcription factor regulating root and shoot growth via Pin3 1018 1073 IPR013591 -
Cme03g00380 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Cme03g00380 1102 MobiDBLite consensus disorder prediction 954 1011 - -
Cme03g00380 1102 MobiDBLite consensus disorder prediction 768 798 - -
Cme03g00380 1102 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1081 - -
Cme03g00380 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 452 503 IPR000408 -
Cme03g00380 1102 SUPERFAMILY FYVE/PHD zinc finger 608 683 IPR011011 -
Cme03g00380 1102 Gene3D - 152 444 IPR009091 -
Cme03g00380 1102 Gene3D - 445 611 IPR009091 -
Cme03g00380 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 282 333 IPR000408 -
Cme03g00380 1102 SUPERFAMILY RCC1/BLIP-II 219 609 IPR009091 -
Cme03g00380 1102 Pfam FYVE zinc finger 608 674 IPR000306 GO:0046872
Cme03g00380 1102 Coils Coil 863 883 - -
Cme03g00380 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 389 437 IPR000408 -
Cme03g00380 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 557 604 IPR000408 -
Cme03g00380 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Cme03g00380 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 282 330 IPR000408 -
Cme03g00380 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 334 384 IPR000408 -
Cme03g00380 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 451 498 IPR000408 -
Cme03g00380 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 334 388 IPR000408 -
Cme03g00380 1102 PRINTS Chromosome condensation regulator RCC1 signature 391 405 IPR000408 -
Cme03g00380 1102 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Cme03g00380 1102 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Cme03g00380 1102 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Cme03g00380 1102 PRINTS Chromosome condensation regulator RCC1 signature 284 300 IPR000408 -
Cme03g00380 1102 PRINTS Chromosome condensation regulator RCC1 signature 493 511 IPR000408 -
Cme03g00380 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 389 440 IPR000408 -
Cme03g00380 1102 ProSiteProfiles PH domain profile. 91 124 IPR001849 -
Cme03g00380 1102 Pfam Transcription factor BRX N-terminal domain 858 893 IPR027988 -
Cme03g00380 1102 SUPERFAMILY PH domain-like 13 123 - -
Cme03g00380 1102 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1081 - -
Cme03g00380 1102 MobiDBLite consensus disorder prediction 768 785 - -
Cme03g00380 1102 MobiDBLite consensus disorder prediction 908 928 - -
Cme03g00380 1102 Coils Coil 814 859 - -
Cme03g00380 1102 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 268 278 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00380 - - - csv:116404564 2073.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00829 Cme-Chr1:9095676 Cme03g00380 Cme-Chr3:5277130 0 dispersed
Cme03g00380 Cme-Chr3:5277130 Cme04g01823 Cme-Chr4:25981225 0 dispersed
Cme04g00492 Cme-Chr4:3922226 Cme03g00380 Cme-Chr3:5277130 1.36E-15 dispersed
Cme06g02416 Cme-Chr6:31284780 Cme03g00380 Cme-Chr3:5277130 2.86E-14 dispersed
Cme10g00457 Cme-Chr10:2895636 Cme03g00380 Cme-Chr3:5277130 3.01E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00380 Cme_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0