Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00384 ATGTCAATGAACTCATCTCTTCCGATCATCATCTTGATCTTCTTGTTTCTCTCCCATTTCCCCTTTCTTTCCCTTTCTTTTCTCATGAATCAGAACATCACCCTCTCCGGTGATGCCCATCTCCGAAACAACGCCATTTTCCTCACTCAAGAGCGCGACTGCCTTTCCCTTTCTCCAAATTCCTCTTCCTCTGCCTCCGGCTTCGGCTCTGCCGTCTACGTCAATCCTGTTCGCTTTCTTGATTCCTCCACCAATTCTTCTGCTTCTTTCTCCTCTCGTTTCTCCCTCTCCATCCTCCCCACCCCTCTCTGCCCTTTCCCCGATGGTTTCTCCTTCCTCATCGCCTCCGATCCCGAATCTTTTACCCTCTCCAATAGCCATATACCCCTTCCCAACCCCTCTCACAATTCCCCTTTCTCCTTTATCGCTGTCGAATTCGATACCAACTTTGATTCTAATCTTGGCGACATTAATGACAACCATCTTGGTCTCAATGTCAATTCGCCCACCTCTTTGACCTCTGTGGATTTTCGATCTCATGGCATTATTCTCAAAAATGGCAGAAAGATTACTTCTTGGATTGAGTATCGAGATGACTCCAAAACGATTCGCGTTTGGGTTGGTTATTCGCAAACAAGACCTGTGAATCCTCTTTTAGTCGCACCGATGGATCTTTCTAAGCAATTCAAGGAGTTTATGTACGTGGGATTCTCTGCTTCTAATGGGCAGGGCTCTGCTCTTTTCATTGTTGATCGTTGGCAGTTTCGAACTTTCGGGTTAGTTCCTTCTTTGAGTCCTGTTGATACCATTAATGAAGGAGCTTGTTTTATGTGTTCGTCGGAGGATTTGAATTCTGATAACAGTCGTTTTGCTGATGCTGATGAACGGAGGAAGAAGAGTGGCGAGATGAGTCTTCTATTTGGAGGTTTGGCTGCATTTGCCTTTTCTGGTGCTTTAATACTTGGTTTTCTTAGTTATGCTTTGATAAAGAAGTTGAGAAGTAGAATGTGTAGAGGAAGAGAAATTGATAGAACTTGTCCTGTTGAGATGAATAGAGTTCCAACAAGATTGTCTCTTGGGGCAATAAAGTTAGCTACAATGGGGTTTAATCAAAACAGAGTTGTTGGGGAAGGTGGTTCTGCTACTGTTTACAAAGGCTCTCTTCCATCAGGTGTAGAAGTGGCTGTTAAACGTTTCGAGCAAAGTACGGTGAATAACCGTCTACGTAATCCTTTCAGGACGGAGTTTGCAACGATGGTGGGATGTTTACGACACAAGAATTTAGTTCAGCTTCATGGATGGTGTTGTGAAGCAAATGAATTAGTGCTTGTTTATGAGTACTTAGCCAATGGAAGCCTTGCCAATCTTCTTCACGAGACATCTCCCAATTCACAATTCGTAATTCCATGGAAGAAGAGGGTTTCCATAGTTCTTGGAGTTGCTTCTGCATTGACATATCTTCATGAAGAATGTGAGAGCCAAATTATCCACAGAGATGTCAAAACTTGCAACATTCTGCTTGATGCAGAGTTGAACGCGAAACTGGGTGATTTCGGTTTAGCAGAAGTGTACGAACACAGTTCGTCGTTGACAAGAATAGCAACCACTCCAGCTGGAACAATGGGGTATCTCGCACCCGAATACCTTTATTCCGGCGTTCCCACCGTGAAAACCGATGTATACAGCTTTGGTGTAGTGATGCTGGAAGTTGCATCGGGTAAGAGGCCCGTAGATGAAGGCGGGTTGGTGCTTGTCGATTGGATTTGGATTCTATGGGGAGGGAAGAGCGTGATGGAAGCAGCTGATCCAAGTCTGATGGGAAATTACGATGTAGTAGAAATGGAGAGAATGTTAACGGTGGGACTTTTTTGTGTACATCCAAATGCTGAGAAGAGGCCAAATGTGAGAGAAGCAGTAAGAATTCTTAAAGGGGAAGCACCACTTCCTGTACTGCCATTGAAAAAACCAATGGTGGGTATTAGGCGTATTTTATCTGATGATTTTGAAGACTTAGAAAATCCTTGTGAGGATTATATCGCTTTCGAGGAACCGGCGTGGATGACCCCCAAAAGTGAGTTTGGTTAG 2085 44.17 MSMNSSLPIIILIFLFLSHFPFLSLSFLMNQNITLSGDAHLRNNAIFLTQERDCLSLSPNSSSSASGFGSAVYVNPVRFLDSSTNSSASFSSRFSLSILPTPLCPFPDGFSFLIASDPESFTLSNSHIPLPNPSHNSPFSFIAVEFDTNFDSNLGDINDNHLGLNVNSPTSLTSVDFRSHGIILKNGRKITSWIEYRDDSKTIRVWVGYSQTRPVNPLLVAPMDLSKQFKEFMYVGFSASNGQGSALFIVDRWQFRTFGLVPSLSPVDTINEGACFMCSSEDLNSDNSRFADADERRKKSGEMSLLFGGLAAFAFSGALILGFLSYALIKKLRSRMCRGREIDRTCPVEMNRVPTRLSLGAIKLATMGFNQNRVVGEGGSATVYKGSLPSGVEVAVKRFEQSTVNNRLRNPFRTEFATMVGCLRHKNLVQLHGWCCEANELVLVYEYLANGSLANLLHETSPNSQFVIPWKKRVSIVLGVASALTYLHEECESQIIHRDVKTCNILLDAELNAKLGDFGLAEVYEHSSSLTRIATTPAGTMGYLAPEYLYSGVPTVKTDVYSFGVVMLEVASGKRPVDEGGLVLVDWIWILWGGKSVMEAADPSLMGNYDVVEMERMLTVGLFCVHPNAEKRPNVREAVRILKGEAPLPVLPLKKPMVGIRRILSDDFEDLENPCEDYIAFEEPAWMTPKSEFG 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5333686 5336240 + MELO3C008394.2.1 Cme03g00384 322395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00384 694 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 28 663 - -
Cme03g00384 694 ProSitePatterns Legume lectins beta-chain signature. 142 148 IPR019825 -
Cme03g00384 694 Pfam Legume lectin domain 26 257 IPR001220 GO:0030246
Cme03g00384 694 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
Cme03g00384 694 ProSiteProfiles Protein kinase domain profile. 369 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00384 694 PANTHER - 28 663 - -
Cme03g00384 694 Gene3D - 18 258 - -
Cme03g00384 694 Gene3D Phosphorylase Kinase; domain 1 333 447 - -
Cme03g00384 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Cme03g00384 694 CDD STKc_IRAK 375 644 - -
Cme03g00384 694 SUPERFAMILY Protein kinase-like (PK-like) 349 642 IPR011009 -
Cme03g00384 694 SMART serkin_6 369 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00384 694 CDD lectin_legume_LecRK_Arcelin_ConA 30 259 IPR001220 GO:0030246
Cme03g00384 694 Gene3D Transferase(Phosphotransferase) domain 1 448 647 - -
Cme03g00384 694 Pfam Protein kinase domain 369 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00384 694 SUPERFAMILY Concanavalin A-like lectins/glucanases 13 261 IPR013320 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00384 Cme-Chr3:5333686 Cme06g02769 Cme-Chr6:34941554 3.71E-143 dispersed
Cme03g00384 Cme-Chr3:5333686 Cme04g02643 Cme-Chr4:32182873 2.23E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64725 PF00069 Pkinase 5.00E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00384 - - csv:101206470 1207.97