Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00392 ATGAAGAGGAAGAGAGAAGTAGAAAAGGAATCCGAAATGAGGTCTTCAACAGCTGAGCTTTCAGTGTTGGCTAAGTTCAAACCTGTTGATCATGCTGCTTCTAACATACCCACTAACCACTTTCTTGCTATTTGCAATTTGATTCTTCAATTTCTGGATAAGGTAGGACCAACAATGACTGTTCTAAGACAAGACATTTATCAGAACATTCAGAGGTTGGAGACCATGTATGAGTCTGATCCTTCGATGTATTCCAATATGGTAGAAATTTTAAAAAAAGAGACAAATGAAGGAAATGCAAGAAAGCTTACCAGTTGTAGCAGAGCCTTTCTTTGGTTGACAAGGTCACTGGATTTTACAGTGTCTTTATTACAAAAGTCAAAAGAAGAACCTAGACTGAGCATGGAGCAAGCGGTAGAGGATGCTTACAACCTTACTCTAAAGCCATGGCATGGATGGATTTCATCTGCTGCTTTCAAAATAGCTCTGAAACTTGTGCCAGATAGTGAAACCTTTACTAATCTCCTAATGGCCAAAGACGAAAACAACGATGCCCTCGTGAAGGAAATAGACTCCTTCATTTCCCAGCTCGCACCTTTTCTAGAAGATATCCATAATATTCTGAGACTGTACAGGTTAGATCGCTTAAAGTCTGCATAA 660 39.39 MKRKREVEKESEMRSSTAELSVLAKFKPVDHAASNIPTNHFLAICNLILQFLDKVGPTMTVLRQDIYQNIQRLETMYESDPSMYSNMVEILKKETNEGNARKLTSCSRAFLWLTRSLDFTVSLLQKSKEEPRLSMEQAVEDAYNLTLKPWHGWISSAAFKIALKLVPDSETFTNLLMAKDENNDALVKEIDSFISQLAPFLEDIHNILRLYRLDRLKSA 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5483424 5485850 + MELO3C008403.2.1 Cme03g00392 322403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00392 219 SUPERFAMILY Glycolipid transfer protein, GLTP 31 216 IPR036497 -
Cme03g00392 219 PANTHER GLYCOLIPID TRANSFER PROTEIN 3 6 216 - -
Cme03g00392 219 Pfam Glycolipid transfer protein (GLTP) 36 177 IPR014830 GO:0005737|GO:0120009|GO:0120013
Cme03g00392 219 Gene3D Glycolipid transfer protein 35 209 IPR036497 -
Cme03g00392 219 PANTHER GLYCOLIPID TRANSFER PROTEIN-RELATED 6 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00392 - - - csv:101203104 422.935
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g00693 Cme03g00392 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00693 Cme-Chr1:6364771 Cme03g00392 Cme-Chr3:5483424 3.37E-73 dispersed
Cme03g00392 Cme-Chr3:5483424 Cme06g00478 Cme-Chr6:3022967 6.21E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1228 Blo01g01330 . . . Bpe02g00611 . . Bma01g02114 Cmo04g02544 . . Cma09g01093 . . . Cpe06g00893 Cpe13g00667 Bhi04g01808 Tan11g1179 . . . . Lcy10g1323 Cla08g00667 Cam08g1098 Cec08g0683 Cco08g0792 Clacu08g0804 . Cre08g0608 Cone4ag1515 . Cone17ag0796 Cone20ag0394 . . . Cme03g00392 Blo17g00220 . . Bda13g01529 Bpe02g01113 Bpe14g00332 . Bma02g00278 . . Cmo09g01102 . . Car04g02342 Car09g00991 Cpe01g02103 . Bhi09g01506 . . . . . . . . . . . . . Lsi08g00528 . Chy03g00592 Cme01g00693
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002201 2 3 2 3 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 1 2 6 4 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00392 Cme_Chr03 FPKM 6.961437 7.20039 5.605525 6.920358 18.104036 14.509323 18.630415 5.150403 4.279697 4.331589