Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00404 ATGCCTCGTCGCAGGGACGACGACGACGACATTGACGCTGATGAGGAAGAGTATGAGGACGAGATGGAACAGCCTCTAGACGACGACGAGGAAGAGGAGGAGGAAGATCGTTCCACTAGGAAGCGCCGGAGATCAGATTTCATAGACGACGTTGCGGAGGAGGATGAGGATGAAGACGAAGAAGAGGAGGATGAGGAGGAGGAGGAGGCTTTTGGTGGCGGTGGTCGGAGGCGGCGTGCCAAGAGACCTAGCGGTTCTCAGTTTTTGGATATTGAGGCTGAGGTCGATAGCGATGACGATGAAGAGGATGATGAAGCTGAGGACGATTTCATAGTTGACAATGTAGCTGATATACCTGATGAAGATGATAATAGAAGGATGCATCGCCGCCCATTGCTACCACGGGAGGATGAACAAGAGGACGTTGAAGCACTTGAAAGAAGGATTCAGGCGAGATATGCAAGGTCAAATCATATGGAATATGACGAGGAAACGACAGAGGTGGAGCAGCAAGCCCTTTTACCTTCTGTAAGGGATCCAAAATTGTGGATGGTTAAATGCGCGATTGGCCGTGAACGGGAGGCTGCTGTTTGTCTAATGCAAAAATGCATTGATAGGGGCCCTGAAATGCAAATAAGATCTGCAGTAGCTCTTGACCATTTGAAGAACTTTATATATATTGAAGCCGACAAAGAAGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAATATATATGCTCAGAAAATAACACTTGTTCCAATTAAAGAGATGACTGACGTTCTCTCTGTTGAAAGCAAAGCAATTGATCTTTCTAGAGATACATGGGTTAGGATGAAGATTGGGACATATAAGGGGGATCTTGCCAAGGTGGTGGATGTTGATAATGTGCGGCAGAGGGTTACTGTGAAACTGATTCCACGGATAGACTTACAGGCTCTTGCTAATAAATTGGAAGGGAGAGAAGTTGCTAAGAAGAAGGCATTTGTTCCTCCACCTCGTTTTATGAATATTGATGAAGCTAGAGAATTACACATCCGCGTAGAGCGTAGACGTGATCCCATTACGGGAGAATACTTTGAGAATATTGGTGGCATGTTTTTCAAGGATGGTTTCTTATATAAAACAGTGTCCATGAAGTCAATAAGTGCTCAAAATATAAAGCCGACTTTCGATGAACTTGAAAAGTTTCGAAAGCCTGGAGAAAATGGAGATGGGGATATTGCTAGTTTGTCTACCTTGTTTGCAAACCGAAAGAAAGGGCACTTTATGAAGGGTGATGCTGTCATTGTTGTTAAGGGGGATCTCAAGAATTTGAAAGGATGGGTTGAGAAAGTAGAGGAAGAAAATGTCCACATCAGACCAGAAATGAAGGGCCTTCCTAAAACTCTCGCTGTGAATGAAAGAGAACTTTGCAAGTACTTTGAGCCTGGGAATCATGTAAAGGTTGTATCGGGCACTCAGGAGGGGGCAACTGGTATGGTTGTGAAGGTGGACCAGCACGTGCTTATTATACTATCTGATACAACCAAGGAACATATTCGGGTATTTGCTGATGATGTTGTTGAGAGCTCTGAGGTAACAACGGGTGTGACGAGAATTGGAGATTATGAACTTCATGATCTAGTGTTATTGGATAATATGAGCTTTGGTGTAATTATTCGTGTAGAAACGGAGGCTTTTCAGGTTCTTAAGGGTACTCCTGATAGGCCTGAGGTTGATATTGTGAAATTGAGGGAAATAAAAAGCAAGATCGACAAGAAAATCAGTGTTCAAGATCGATTTAATAATACAATATCCTCCAAGGACGTAGTGAGGATTCTTGAAGGTCCTTGTAAGGGAAAACAAGGTCCTGTGGAGCACATATACAGAGGAATTCTGTTTATTTATGATCGCCATCACTTGGAACATGCAGGCTTTATATGTGCTAAATCACAATCTTGTGTTGTTGTGGGTGGATCCCGAACTAATGGAAATAGAAATGGAAATTCATACTCTAGGTTTGCCGGCATTGCGACCCCACCTCGTTTTCCTCAGTCTCCTAAGAGATTTTCCAGAGGAGGTCCCCCCAATGATAGTGGGGGAAGACATAGAGGTGGGAGAGGGCATCATGATGGGTTGGTTGGATCAACAGTAAAAGTTCGTCAAGGACCTTATAAGGGTTATCGTGGGCGTGTCGTTGAAATAAAAGGCCAACTGGTTCGAGTGGAGCTTGAATCTCAAATGAAAGTTGTCACAGTTGACCGCAATTTTATCTCGGATAATGTGGCCATTTCAACCCCCCATCGTGATGCATCAAGATATGGTATGGGAAGTGAAACTCCAATGCATCCTTCTCGAACTCCCCTGCATCCATACATGACGCCAATGAGAGATATTGGAACAACACCAATTCATGATGGCATGAGAACACCTATGCGAGATCGAGCTTGGAATCCCTATGCACCCATGAGTCCGTCAAGGGATAACTGGGAGGAAGGGAATCCTGCAACTTGGGGAGCGAGTCCACAGTACCAGCCAGGAAGTCCTCCTTCACGAACATATGAAGCTCCGACTCCTGGTTCTGGTTGGGCAAATACTCCTGGTGGCAGTTACAGTGATGCTGGTACCCCCCGTGATAGTGGTTCTGCCTATGGTGGTGATACCGAAGGGCCATGGTACATGCCAGACATATTAGTCAATTACCGTAGGTCAGGAGATGATCCCATCATGGGAGTAATTCGTGAGGTGCTTCCGGATGGCTCGTGTAGGATAGGGCTTGGGTCAAGTGGAAATGGTGAAACGGTAACAGCCCCTTCTAGTGAAGTAGAAGTGATTGTTCCTAGGAAGTCGGACAAGATCAAGATAATGGGTGGTGCATTGCGTGGTGCCACTGGCAAGTTGATCGGTGTAGACGGTACCGACGGAATTGTGAAGGTAGACGACACTCTTGATGTTAAGATTTTGGATTTAGTTATTCTTGCTAAACTTGCTCAACCATAA 2982 45.1 MPRRRDDDDDIDADEEEYEDEMEQPLDDDEEEEEEDRSTRKRRRSDFIDDVAEEDEDEDEEEEDEEEEEAFGGGGRRRRAKRPSGSQFLDIEAEVDSDDDEEDDEAEDDFIVDNVADIPDEDDNRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDRGPEMQIRSAVALDHLKNFIYIEADKEAHVREACKGLRNIYAQKITLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSMKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVDQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNMSFGVIIRVETEAFQVLKGTPDRPEVDIVKLREIKSKIDKKISVQDRFNNTISSKDVVRILEGPCKGKQGPVEHIYRGILFIYDRHHLEHAGFICAKSQSCVVVGGSRTNGNRNGNSYSRFAGIATPPRFPQSPKRFSRGGPPNDSGGRHRGGRGHHDGLVGSTVKVRQGPYKGYRGRVVEIKGQLVRVELESQMKVVTVDRNFISDNVAISTPHRDASRYGMGSETPMHPSRTPLHPYMTPMRDIGTTPIHDGMRTPMRDRAWNPYAPMSPSRDNWEEGNPATWGASPQYQPGSPPSRTYEAPTPGSGWANTPGGSYSDAGTPRDSGSAYGGDTEGPWYMPDILVNYRRSGDDPIMGVIREVLPDGSCRIGLGSSGNGETVTAPSSEVEVIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5620181 5629954 - MELO3C008414.2.1 Cme03g00404 322415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00404 993 PANTHER SUPPRESSOR OF TY 5 876 991 IPR039659 GO:0006357|GO:0032784
Cme03g00404 993 PANTHER SUPPRESSOR OF TY 5 27 866 IPR039659 GO:0006357|GO:0032784
Cme03g00404 993 ProSitePatterns Ribosomal protein L24 signature. 426 443 IPR005825 GO:0003735|GO:0005840|GO:0006412
Cme03g00404 993 Gene3D - 691 755 IPR014722 -
Cme03g00404 993 MobiDBLite consensus disorder prediction 809 883 - -
Cme03g00404 993 Coils Coil 48 68 - -
Cme03g00404 993 CDD NGN_Euk 181 263 IPR039385 -
Cme03g00404 993 SUPERFAMILY Translation proteins SH3-like domain 466 525 IPR008991 -
Cme03g00404 993 Coils Coil 135 155 - -
Cme03g00404 993 CDD KOW_Spt5_6 934 991 IPR041980 -
Cme03g00404 993 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 876 991 - -
Cme03g00404 993 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 27 866 - -
Cme03g00404 993 MobiDBLite consensus disorder prediction 9 34 - -
Cme03g00404 993 CDD KOW_Spt5_2 423 473 IPR041975 -
Cme03g00404 993 CDD KOW_Spt5_1 274 311 IPR041973 -
Cme03g00404 993 MobiDBLite consensus disorder prediction 92 117 - -
Cme03g00404 993 Pfam Spt5 transcription elongation factor, acidic N-terminal 88 175 IPR022581 -
Cme03g00404 993 Gene3D - 477 526 IPR014722 -
Cme03g00404 993 MobiDBLite consensus disorder prediction 50 69 - -
Cme03g00404 993 CDD KOW_Spt5_4 602 644 IPR041977 -
Cme03g00404 993 CDD KOW_Spt5_5 705 753 IPR041978 -
Cme03g00404 993 SMART kow_9 705 732 IPR005824 -
Cme03g00404 993 SMART kow_9 474 501 IPR005824 -
Cme03g00404 993 SMART kow_9 598 625 IPR005824 -
Cme03g00404 993 SMART kow_9 270 297 IPR005824 -
Cme03g00404 993 SMART kow_9 940 967 IPR005824 -
Cme03g00404 993 SMART kow_9 422 449 IPR005824 -
Cme03g00404 993 MobiDBLite consensus disorder prediction 1 142 - -
Cme03g00404 993 Gene3D - 161 263 IPR036735 GO:0006355
Cme03g00404 993 MobiDBLite consensus disorder prediction 35 49 - -
Cme03g00404 993 CDD KOW_Spt5_3 474 524 IPR041976 -
Cme03g00404 993 Pfam KOW motif 477 504 IPR005824 -
Cme03g00404 993 Pfam KOW motif 708 738 IPR005824 -
Cme03g00404 993 MobiDBLite consensus disorder prediction 661 709 - -
Cme03g00404 993 MobiDBLite consensus disorder prediction 762 786 - -
Cme03g00404 993 MobiDBLite consensus disorder prediction 830 871 - -
Cme03g00404 993 Gene3D - 270 312 IPR014722 -
Cme03g00404 993 SMART nusgn_4 179 265 IPR006645 GO:0140673
Cme03g00404 993 Pfam Early transcription elongation factor of RNA pol II, NGN section 181 262 IPR005100 -
Cme03g00404 993 Gene3D - 417 474 IPR014722 -
Cme03g00404 993 MobiDBLite consensus disorder prediction 118 142 - -
Cme03g00404 993 PIRSF Spt5 3 881 IPR017071 GO:0006357|GO:0032784
Cme03g00404 993 PIRSF Spt5 859 993 IPR017071 GO:0006357|GO:0032784
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00404 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - csv:101204562 1796.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00404 Cme_Chr03 FPKM 9.112336 9.506355 27.235516 26.2668 63.704697 53.088398 61.221134 23.933666 25.734045 26.355749