Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00421 ATGGTAACATCAGGGCCACCCACTCCCATGGGTGGTGGTGCACAGTCTGTTTCGCCCTCACTTCTACGATCTAATTCTGGATTGCTGGGAGTTCAAGGTGGTATGCTTCCTTCACAGGCAGCGTTTTCTTCACTTGTATCACCCCGGAATCAGTTCAATAATATGAATATGCTTGGTAATATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACTTCCATGTCCTGGCAATAACCACCCTGGTGCTGAACCGGACCCTCTTTCTGGTGTTGGTAATGGAATGAGCTTTAATAATCCTTCATCGTCATTTGTAGCATCAAATATGGCGAACCCCGTTTCATCTGTCCAAGGGCAAAATCCACAATTTTCTAACCTTCCTAGCAACCAGTTGTTATCAGATCAGCAGCAGTCGCAGCAACTAGAACCCCAGAATTTCCAACATAGTCAACAGTCGATGGAGCAGTTTTCTGCACTTCAGAGCAATCAACAACCGCAATTTCAAGCAATTCGAGGGTTGACTGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACTAGCAATGATCAACATGGACAACAGCAGCAGCAGCAGCAGCATTTGCAAACTTTGAGAAACCTTGGTCCAGTGAAATTGGAATCACAACGACTTCAGTCGATGAGAGGTTTGGCACCAGTAAAAATGGAACCCCAACAATCGGACCAGTCGTTATTTCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCATCAGCATCCGCACCAACAGCAACAACAATCACAACAATTTCTCCATATGTCTAGACAGTCCTCTCAGGTAGCGGCTGCCCAAATTAATCTAATGCATCAGCAAAGGATTTTGCAATTGCAACAACAACATCAACAACAACTCTTAAAAAGTATGCCTCCTCAGCGGCCACAATTGCAGCAACATTACCAACAGCAGAACCTTTCTCTGAGATCTCCTGTTAAACCAGGATATGAACCTGGAATGTGTGCCCGACGTTTGACTCATTACATGTATCACCAGCAACACAGACCTGAAGACAACAACATAGATTTCTGGAGGAAATTTGTTAACGAGTACTTTGCACCTCATGCCAAAAAGAAATGGTGTGTTTCCATGTATGGAAGTGGACGACAAACAACAGGAGTGTTTCCTCAGGATGTATGGCATTGTGAAATATGCAACCGCAAGCCTGGGCGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGGCTTTTTAAGATCAAGTATGAAAGTGGTACTATGGAGGAACTACTTTATCTAGACATGCCTCGTGAATATCATAATGCATCTGGTCAGATTGTCTTGGATTATGCAAAAGCGATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTCCGTGATGGCCAACTTCGAATCGTTTTTTCGCCTGACCTTAAGATATGTTCTTGGGAATTCTGTGCTCGACGCCATGAAGAACTTATTCCTAGGAGATTGTTGATACCTCAGGTCAGTCACCTTGGAGCAGCAGCTCAAAAGTTCCAGTCTGCCATTCAAAACACATCATCCAATTTATCAACGCCTGAATTGCAAAACAATTGTAACATGTTTGTGGCTTCAGCACGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGCGATACGTGCGTTGTCTTCAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAACTGGGATTGGGCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGACTAGTTCATCATCAGGGGTTACGAATCAAGCTCCAATTTCTGATGAACAGCAGCAACAACATTCATCCATAGCCCAGCACTCGAATAACAACCAGAGTTCTGTCCAGGCTTCTGCAGTACAGCAGCTTACAGCTAGCAATGGTGTGTCCAGTGTAAATAATACCGCCAACCAACCTTCAACATCAAACTCAGCGAGCACCATTGCTGGTCTTCTTCACCAGAATTCTATGAACTCGAGACAGCAGAACTCTATGCCTAATGCTAGCAACTCATATGGGGGAAGTTCTGTTCAGATTCCATCACCTGGTTCTTCCAGTACAGTTCCACCTACGCAACCGAACCCTTCTACATTCCAGCCACTGACTCCCTCATCGTCCAACAGTCTTTCACAACCATCGCATGCAGCTGCAAAGAATCCCAATCAAATAAGTGCTGCTAATTCTCCGGCAAATATCTCAATGCAGCAACAACCTGCCTTATCTGGAGATGCTGATCCTAGTGAAACACAGTCCTCCGTGCAAAAGATCCTACAAGAGATGATGATGAATAACCAAATGAATGGGCCAAATAGTCTAGTTGGTGTTGGTTCCGTGGTCAATGATATGAAAAATATGAATGGGGTCTTACCCACAAGTAGTACAGGTCCCAACAATGGGAATTGTATAGGGGGAAATGGAGCGACGAACGGTGGCACAGGGATGGGAGGAGGTGGATACGGATCAATGGGGAGCGGGCTAGGGCAGCCTGTCATAGTTAACGGAACGAGGACTGCAATGGGGAACAATGCCATTATGAATAGACGAATAGGAATGGCATCGCTCGCCCTAGAACAAAGCATGAACGGTCAACCACAGGATATGGGAAACCAGCTTCTTGGTGGACTTGGAGCTGTAAATGGGTATAATAATCTCCAATTTGACTGGAAGCCATCCCCATGA 2754 45.1 MVTSGPPTPMGGGAQSVSPSLLRSNSGLLGVQGGMLPSQAAFSSLVSPRNQFNNMNMLGNMSNVSSLLNQSFGNGAPNSGLPCPGNNHPGAEPDPLSGVGNGMSFNNPSSSFVASNMANPVSSVQGQNPQFSNLPSNQLLSDQQQSQQLEPQNFQHSQQSMEQFSALQSNQQPQFQAIRGLTGVGPVKLEPQVTSNDQHGQQQQQQQHLQTLRNLGPVKLESQRLQSMRGLAPVKMEPQQSDQSLFQQQQQQQQQQQQQHQHPHQQQQQSQQFLHMSRQSSQVAAAQINLMHQQRILQLQQQHQQQLLKSMPPQRPQLQQHYQQQNLSLRSPVKPGYEPGMCARRLTHYMYHQQHRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKFQSAIQNTSSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRTSSSSGVTNQAPISDEQQQQHSSIAQHSNNNQSSVQASAVQQLTASNGVSSVNNTANQPSTSNSASTIAGLLHQNSMNSRQQNSMPNASNSYGGSSVQIPSPGSSSTVPPTQPNPSTFQPLTPSSSNSLSQPSHAAAKNPNQISAANSPANISMQQQPALSGDADPSETQSSVQKILQEMMMNNQMNGPNSLVGVGSVVNDMKNMNGVLPTSSTGPNNGNCIGGNGATNGGTGMGGGGYGSMGSGLGQPVIVNGTRTAMGNNAIMNRRIGMASLALEQSMNGQPQDMGNQLLGGLGAVNGYNNLQFDWKPSP 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5822509 5830936 + MELO3C008420.2.1 Cme03g00421 322432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00421 917 MobiDBLite consensus disorder prediction 723 751 - -
Cme03g00421 917 PANTHER LIM DOMAIN-BINDING PROTEIN 1 916 IPR029005 -
Cme03g00421 917 MobiDBLite consensus disorder prediction 187 209 - -
Cme03g00421 917 MobiDBLite consensus disorder prediction 595 645 - -
Cme03g00421 917 MobiDBLite consensus disorder prediction 71 104 - -
Cme03g00421 917 MobiDBLite consensus disorder prediction 189 209 - -
Cme03g00421 917 Pfam LIM-domain binding protein 345 599 IPR029005 -
Cme03g00421 917 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 916 - -
Cme03g00421 917 MobiDBLite consensus disorder prediction 683 710 - -
Cme03g00421 917 MobiDBLite consensus disorder prediction 235 278 - -
Cme03g00421 917 MobiDBLite consensus disorder prediction 1 21 - -
Cme03g00421 917 MobiDBLite consensus disorder prediction 683 751 - -
Cme03g00421 917 MobiDBLite consensus disorder prediction 120 172 - -
Cme03g00421 917 MobiDBLite consensus disorder prediction 237 278 - -
Cme03g00421 917 MobiDBLite consensus disorder prediction 758 777 - -
Cme03g00421 917 MobiDBLite consensus disorder prediction 602 645 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00421 Cme-Chr3:5822509 Cme03g00586 Cme-Chr3:9213697 0 dispersed
Cme03g00421 Cme-Chr3:5822509 Cme09g01449 Cme-Chr9:19708414 1.20E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00421 - - csv:101218018 1549.64