Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00426 ATGGGAATTAAGGTGGGTGAGGGAAGAGGCAGTGCAATCGGAAGAGGCGTCGCTGTTGCCGCCGTTATAGGGTTAGTTATGATGTCTCAGTTGGAAAGCGTGGAGGCAGCCGTTTACGATGTCGGCGGCTCCAGTGGATGGACCTTTAACGTCCAAAATTGGCCCAAAGGAATACGTTTTCGTGCCGGTGATATTCTCAAGTTCAATTACGACTCATCAATTCATAACGTGGTGGTGGTGAACAAAGCTGGGTACGCCTCCTGCAAAACTCCGGGGGGTGCCAAAGTGTACAACACCGGCAGCGATCAGATCAAATTACCCAAAGGACAGAGCTATTTCATCTGCAACTTCCCCGGCCACTGTGAGGCCGGCATGAAGATCGCCGTCAATGCTCTCTGA 399 51.63 MGIKVGEGRGSAIGRGVAVAAVIGLVMMSQLESVEAAVYDVGGSSGWTFNVQNWPKGIRFRAGDILKFNYDSSIHNVVVVNKAGYASCKTPGGAKVYNTGSDQIKLPKGQSYFICNFPGHCEAGMKIAVNAL 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5933557 5935512 + MELO3C008424.2.1 Cme03g00426 322437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00426 132 Gene3D - 35 132 IPR008972 -
Cme03g00426 132 ProSitePatterns Type-1 copper (blue) proteins signature. 109 125 IPR028871 -
Cme03g00426 132 PANTHER BLUE COPPER PROTEIN 16 130 IPR039391 GO:0009055
Cme03g00426 132 PANTHER BLUE PROTEIN, PUTATIVE-RELATED 16 130 - -
Cme03g00426 132 CDD Plantacyanin 37 131 IPR041844 -
Cme03g00426 132 SUPERFAMILY Cupredoxins 37 131 IPR008972 -
Cme03g00426 132 ProSiteProfiles Phytocyanin domain profile. 37 132 IPR003245 GO:0009055
Cme03g00426 132 Pfam Plastocyanin-like domain 47 125 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00426 - - - cmo:103485741 248.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00426 Cme-Chr3:5933557 Cme06g01288 Cme-Chr6:10645985 6.16E-49 dispersed
Cme03g00426 Cme-Chr3:5933557 Cme02g01189 Cme-Chr2:17122601 4.31E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1192 Blo01g01321 . Bda01g00688 . Bpe02g00618 . . Bma01g02106 . Cmo15g00642 . . . . Sed01g0954 . . Bhi04g01831 Tan11g1205 Cmetu03g0089 . Hepe02g2751 . Lcy10g1303 . . . . . . . . . . Cone20ag0408 . . . Cme03g00426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00269 . Chy03g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000300 8 5 4 2 2 5 6 3 5 4 3 5 8 4 4 7 5 4 3 4 4 5 2 4 6 5 4 8 6 4 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00426 Cme_Chr03 FPKM 1.451539 1.231278 0.391851 0.329719 2.531102 1.369966 1.759382 0.061551 0.076206 0.056347